Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0721
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)                    28   8.1  
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)                28   8.1  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   8.1  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       28   8.1  

>SB_36999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 289 LETFKSNK-LMLN*SFELFINTVKFVPNHYLEIDKRYL 399
           LETF S     +N S ++ +N +KF P  +L IDK ++
Sbjct: 51  LETFLSFVWFCMNRSLKVNVNRMKFYPQKHLNIDKDFV 88


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 126 VDKRDHTSKYYIFRNFKL--FNENVVLRFKSKQNANIN 233
           VDK ++T + +  RNF L  +N   +  F+SK N NI+
Sbjct: 169 VDKLEYTLQLHSRRNFHLTHYNIETLKYFRSKNNENIS 206


>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
          Length = 955

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 576 HLLRAIKFYINTVNNRRSTVIYRNSGQTFNLLTIITDTHVENLLILWEK 430
           HLL  ++  +N   +R + V  + SG++FN+   +T   V  L I W+K
Sbjct: 118 HLLVGVQLKVNL--DRYNLV--KRSGESFNITCEVTSAGVSTLNIEWQK 162


>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
          Length = 168

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 624 CLAHNHCDIWFD-SCLAHLLRAIKFYINTVNNRRSTVIYRNS 502
           C+ H    I +  SC++H +  I++  + +N+  ST++Y+ S
Sbjct: 34  CINHPVSTILYQPSCISHPVSTIRYQPSRINHPISTILYQPS 75


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 265 NYFSIKKHLETFKSNKLMLN*SFELFINTVKFVPNHYLEIDKRYL 399
           NY ++ K+  T   N L L+ ++         +  +YL + K YL
Sbjct: 26  NYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYL 70


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 265 NYFSIKKHLETFKSNKLMLN*SFELFINTVKFVPNHYLEIDKRYL 399
           NY ++ K+  T   N L L+ ++         +  +YL + K YL
Sbjct: 26  NYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNYL 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,144,319
Number of Sequences: 59808
Number of extensions: 390471
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)