Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0721
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 428 FFSHKISKFSTCVSVIIV 481
           F SH +SK S  V  IIV
Sbjct: 160 FISHTMSKLSRAVKFIIV 177


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 146 SMVSFIYHQVDFRSTVPKYXNISVTPL 66
           S+V +I  +  FRS +  Y NI  T L
Sbjct: 343 SIVFYIISRYVFRSALEDYCNIVATHL 369


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 146 SMVSFIYHQVDFRSTVPKYXNISVTPLSKPIC 51
           +M++F      FRST+P   N++   +   +C
Sbjct: 339 TMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 370


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 146 SMVSFIYHQVDFRSTVPKYXNISVTPLSKPIC 51
           +M++F      FRST+P   N++   +   +C
Sbjct: 308 TMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 339


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 146 SMVSFIYHQVDFRSTVPKYXNISVTPLSKPIC 51
           +M++F      FRST+P   N++   +   +C
Sbjct: 359 TMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 390


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 146 SMVSFIYHQVDFRSTVPKYXNISVTPLSKPIC 51
           +M++F      FRST+P   N++   +   +C
Sbjct: 308 TMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 339


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 159 IFRNFKLFNEN 191
           + RN+ LFNEN
Sbjct: 280 VIRNYTLFNEN 290


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -3

Query: 567 RAIKFYINTVNNRRSTVIYRNSGQTFNLLTIITDTHVENLLILWEKK 427
           R + FY N  +  +     +  G+T   +++ ++T   N+L   ++K
Sbjct: 304 RKVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQK 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,446
Number of Sequences: 438
Number of extensions: 4265
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)