Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0720
         (713 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...   125   9e-28
UniRef50_Q2A131 Cluster: Thrombospondin type 1 repeat-containing...    44   0.005
UniRef50_A1U6L7 Cluster: Endonuclease/exonuclease/phosphatase; n...    40   0.061
UniRef50_A3E0P7 Cluster: Rhamnospondin 1; n=18; Cnidaria|Rep: Rh...    38   0.32 
UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like p...    37   0.57 
UniRef50_Q2MCN4 Cluster: HyTSR1 protein precursor; n=4; Cnidaria...    35   2.3  
UniRef50_Q6IQ32 Cluster: ADNP homeobox protein 2; n=12; Eutheria...    34   4.0  
UniRef50_Q4W9Q6 Cluster: Conserved serine-threonine rich protein...    33   5.3  
UniRef50_UPI00005A4635 Cluster: PREDICTED: similar to statin-lik...    33   9.2  
UniRef50_A0UTV6 Cluster: Phage integrase family protein; n=3; Bu...    33   9.2  
UniRef50_A7J387 Cluster: C2H2 zinc finger protein 1; n=1; Thellu...    33   9.2  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score =  125 bits (302), Expect = 9e-28
 Identities = 58/67 (86%), Positives = 60/67 (89%)
 Frame = -3

Query: 225 WGRXXXSSADPDVCADXLKDVVLQGMELFIPSSQVPXGGRSRPWYNNASRDAAHLKRTAA 46
           WGR   SSADPDVCAD LKDVVLQGMELFIPSS+VP GGRSRPWYNNASRDAAHLKR +A
Sbjct: 275 WGRFCFSSADPDVCADRLKDVVLQGMELFIPSSEVPVGGRSRPWYNNASRDAAHLKR-SA 333

Query: 45  YVAWDXA 25
           YVAWD A
Sbjct: 334 YVAWDDA 340



 Score =  100 bits (239), Expect = 4e-20
 Identities = 52/85 (61%), Positives = 53/85 (62%)
 Frame = -2

Query: 493 YGXSQLVTQPTRVPDIEGHEPSXXXXXXXXDPAGYSVVVDAPLGSSDHCLIXXXXXXXXX 314
           YG SQLVTQPTRV DIEGHEPS        DPAGYSVVVDAPLGSSDHCLI         
Sbjct: 185 YGLSQLVTQPTRVLDIEGHEPSLLDLLLTTDPAGYSVVVDAPLGSSDHCLIRAATPLSRP 244

Query: 313 XXXXXXXXXRVWQYLSADWEDCVSF 239
                    RVWQYLSADW+    F
Sbjct: 245 SRRTTTRYRRVWQYLSADWDGLREF 269



 Score = 59.3 bits (137), Expect = 9e-08
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = -1

Query: 605 KRGLTACLSQYPSAEVVVLGDFNAHHQEWLGSK 507
           + G    L QYPSAEVVVLGDFNAHHQEWLGS+
Sbjct: 137 QEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSR 169



 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 28/65 (43%), Positives = 32/65 (49%)
 Frame = -3

Query: 687 HGGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXWRL*RSPPRVVGVQ 508
           HGGCT          + +AG ALIEHVQE TNRVLE  P                 +G +
Sbjct: 110 HGGCTRVYACLYRSHSSDAGSALIEHVQEGTNRVLEQYPSAEVVVLGDFNAHHQEWLGSR 169

Query: 507 TTDLP 493
           TTDLP
Sbjct: 170 TTDLP 174


>UniRef50_Q2A131 Cluster: Thrombospondin type 1 repeat-containing
           protein 2 precursor; n=3; Cnidaria|Rep: Thrombospondin
           type 1 repeat-containing protein 2 precursor - Hydra
           magnipapillata (Hydra)
          Length = 899

 Score = 43.6 bits (98), Expect = 0.005
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
           GG +  TR+CT P+ +N GK   E +QE  +   +P PI G  G W
Sbjct: 246 GGISVRTRSCTNPSPLNGGKNCSESIQESKDCSTDPCPIDGNYGLW 291



 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -3

Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
           GG +  TR CT P+  N GK   E   E      +P PI G  G W
Sbjct: 535 GGISVRTRTCTNPSPSNGGKDCSEPTLESKICSSDPCPIDGNFGEW 580


>UniRef50_A1U6L7 Cluster: Endonuclease/exonuclease/phosphatase; n=8;
           Gammaproteobacteria|Rep:
           Endonuclease/exonuclease/phosphatase - Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 /
           VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
           11845))
          Length = 286

 Score = 39.9 bits (89), Expect = 0.061
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -1

Query: 560 VVVLGDFNAHHQEWLGSKPLTSLRXLPAGDTAHPCPRY*GARAFS---VGPSADHRSSRI 390
           VV++GD NAH ++ L   PL     +P  DTAH  P +   +A     V PS + R S +
Sbjct: 202 VVLMGDMNAHAEQLLTRTPLKETDLIPLPDTAHSFPSWRPEKALDHILVSPSLEIRRSEV 261


>UniRef50_A3E0P7 Cluster: Rhamnospondin 1; n=18; Cnidaria|Rep:
           Rhamnospondin 1 - Hydractinia symbiolongicarpus (Hermit
           crab hydroid)
          Length = 726

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
           GG    TR+CT PT  N G+     V E     ++P P+ GG   W
Sbjct: 239 GGSMTRTRSCTNPTPENGGEECNGPVSESAECGMDPCPVDGGYSKW 284



 Score = 35.5 bits (78), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
           GG  E  R CT P   N GK  +  + E  +    P P+ G  G W
Sbjct: 412 GGSKERRRTCTNPEPANGGKNCVGALSESASCGTNPCPVDGKYGTW 457


>UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like
           protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to pol-like protein - Nasonia vitripennis
          Length = 1119

 Score = 36.7 bits (81), Expect = 0.57
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -1

Query: 608 CKRGLTACLSQYPSAEVVVLGDFNAHHQEWLGSK 507
           CK  LT  + QY S   ++ GDFNAHH  W  SK
Sbjct: 108 CK--LTDTVKQYGSKHFILAGDFNAHHSVWGSSK 139


>UniRef50_Q2MCN4 Cluster: HyTSR1 protein precursor; n=4; Cnidaria|Rep:
            HyTSR1 protein precursor - Hydra attenuata (Hydra) (Hydra
            vulgaris)
          Length = 3023

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 666  TRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
            TR CT P+  N G     H+ E  +  L+P P+ G    W
Sbjct: 2243 TRTCTNPSPANGGLGCTGHLIESVSCTLKPCPVNGNFSQW 2282


>UniRef50_Q6IQ32 Cluster: ADNP homeobox protein 2; n=12; Eutheria|Rep:
            ADNP homeobox protein 2 - Homo sapiens (Human)
          Length = 1131

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 547  PXTTTSADGYWLK--HAVSPLLHMLYQS--FSCIYCCWTCTGTRILGTAPVDSTR 699
            P  TT A    LK  H + P +H + +S  F CI+CC   TG   L    V   R
Sbjct: 883  PFVTTEAYELHLKERHHIMPTVHTVLKSPAFKCIHCCGVYTGNMTLAAIAVHLVR 937


>UniRef50_Q4W9Q6 Cluster: Conserved serine-threonine rich protein;
           n=2; Trichocomaceae|Rep: Conserved serine-threonine rich
           protein - Aspergillus fumigatus (Sartorya fumigata)
          Length = 753

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 358 TIQVERRPPHCIRLDRWSAEGPTEKARAPQYLGHGWAV---SPAGRXRREVSGLDPNHSW 528
           T  V+ R    +   R+ +    E+ R  +YL HG +       G  +R  S  D +HSW
Sbjct: 36  TTSVQSRGIWRLTYHRYGSRSSDERRRLEKYLRHGPSKLRDRQVGHRQRSQSSFDDHHSW 95

Query: 529 W 531
           W
Sbjct: 96  W 96


>UniRef50_UPI00005A4635 Cluster: PREDICTED: similar to statin-like;
           n=2; Canis lupus familiaris|Rep: PREDICTED: similar to
           statin-like - Canis familiaris
          Length = 667

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 221 GGSAXPLLILTSVRTXL-KTWCSR-GWNCLSPPLKCXLGVAADPGITMPAG 75
           GGSA P+L L        +T   R GW  L  P  C L VA+ PG +MP G
Sbjct: 519 GGSARPVLTLPGASAGAGRTQSHRAGWAVLPAPRLC-LPVASGPGGSMPGG 568


>UniRef50_A0UTV6 Cluster: Phage integrase family protein; n=3;
           Burkholderiaceae|Rep: Phage integrase family protein -
           Burkholderia multivorans ATCC 17616
          Length = 343

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 353 IRRSKWS-VDHHTVSGWIG-GQQKVQQRRLVPLNIWDTGGLCHQLGXAVGR 499
           I R +W  +DH+   G    GQ   ++RR+ P+ +W    +C +LG   GR
Sbjct: 146 IARKEWKWLDHNPFDGMRQPGQNPPRERRIAPIEVW---RICRRLGYVSGR 193


>UniRef50_A7J387 Cluster: C2H2 zinc finger protein 1; n=1;
           Thellungiella halophila|Rep: C2H2 zinc finger protein 1
           - Thellungiella halophila (Salt cress)
          Length = 276

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +2

Query: 548 QXPPPPQMGTGSSTRLVLSCTCSIRAFPAFTAVGPVQARVYSVQPP 685
           Q  PPPQ     STRL   C+   +AFP++ A+G  +A  + ++PP
Sbjct: 96  QPSPPPQ----ESTRLSYKCSVCGKAFPSYQALGGHKAS-HRIKPP 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,870,980
Number of Sequences: 1657284
Number of extensions: 15910646
Number of successful extensions: 40587
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 38532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40562
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)