Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0720
         (713 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   1.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.3  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    21   9.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD 312
           PP +  +T K+  TW  FDD
Sbjct: 120 PPGIFKSTCKMDITWFPFDD 139


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD 312
           PP +  +T K+  TW  FDD
Sbjct: 120 PPGIFKSTCKMDITWFPFDD 139


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD 312
           PP +  +T K+  TW  FDD
Sbjct: 120 PPGIFKSTCKMDITWFPFDD 139


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD 312
           PP +  +T K+  TW  FDD
Sbjct: 120 PPGIFKSTCKIDITWFPFDD 139


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD 312
           PP +  +T K+  TW  FDD
Sbjct: 120 PPGIFKSTCKMDITWFPFDD 139


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -3

Query: 174 LKDVVLQGMELFI 136
           LK+VVL G+ELFI
Sbjct: 293 LKNVVLYGLELFI 305


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 192 DVCADXLKDVVLQGMELFIPSSQVPXGGRSRPWY 91
           DVC   L      G+++  P+  +     +RPW+
Sbjct: 43  DVCERFLAPKGFGGVQISPPNENLVVTSSNRPWW 76


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 575 YPSAEVVVLGDFNAHHQEWL 516
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 575 YPSAEVVVLGDFNAHHQEWL 516
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 575 YPSAEVVVLGDFNAHHQEWL 516
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 575 YPSAEVVVLGDFNAHHQEWL 516
           + S  VV L DF +H   W+
Sbjct: 447 FESPPVVFLNDFISHQHAWI 466


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 407 GQQKVQQRRLVPLNIWDTGG 466
           G +  Q+R  VP+ +W  GG
Sbjct: 30  GDKPPQERPKVPVLVWIYGG 49


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -3

Query: 549 WRL*RSPPRVVGVQTTDLPTASPSW*HSP 463
           W L  SPP    +     P+ SP+  + P
Sbjct: 324 WSLTSSPPPPYQISAQPTPSQSPNQIYQP 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,935
Number of Sequences: 336
Number of extensions: 3876
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)