Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0720
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    28   1.2  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   4.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.1  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 253 PPNLLTNTAKLFDTWSSFDD*DER 324
           PPN + NTA +  ++SSF D D R
Sbjct: 299 PPNYIPNTAMMGPSYSSFGDTDPR 322


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 88  VIPGSAATPXXHLRGG-DKQFHPLEH 162
           V+PG  ++P  HL GG D   + +EH
Sbjct: 621 VVPGFVSSPNLHLAGGSDTPIYCIEH 646


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 356  RRSKWSVDHHTVSGWIGGQQKVQQRRLVPLNI 451
            R+SKW    ++  GW  G  K + RR+ P  I
Sbjct: 1301 RQSKWREWLNSDEGWTQGLSKDKVRRIKPCTI 1332


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 705  VAARRIHGGCTEYTRACTGPTAV 637
            V++RR+ G C ++   CTG   +
Sbjct: 1948 VSSRRLTGECNKHAATCTGSVGI 1970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,358
Number of Sequences: 5004
Number of extensions: 54667
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)