Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0720
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0434 - 17533633-17534637 30 1.6
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 29 2.8
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 29 3.7
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 29 3.7
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322... 29 4.8
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 4.8
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 4.8
03_05_0844 + 28139996-28140736 29 4.8
03_02_0198 + 6344952-6347483 29 4.8
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 28 6.4
12_01_1084 + 11276330-11276476,11276594-11276974 28 8.5
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 28 8.5
05_05_0017 + 21546434-21546841 28 8.5
>09_04_0434 - 17533633-17534637
Length = 334
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = +1
Query: 298 SSFDD*DERVVXQHG*GSDQTIQVERRPPHCIRLDRWSAEGPTEKARAPQYLGH 459
S D DE QH + Q+ R PPH SA P E AP Y H
Sbjct: 258 SGSGDADEHRGHQHKPEPQEPRQLRRPPPHLSAAAAVSAAQPVEPCGAPMYACH 311
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 120 PXGGRSRPWYNNASRDAAHLKRTA 49
P GG+ PW NNA D LK+ A
Sbjct: 224 PLGGKGTPWSNNAVMDCPLLKQIA 247
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 596 VLSCTCSIRAFPAFTAVGPVQARVYS 673
+LS S RA PA TAVG + A+VY+
Sbjct: 25 LLSTATSTRASPADTAVGGIAAKVYT 50
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = +1
Query: 94 PG-SAATPXXHL--RGGDKQFHPLEHHVFKXVRTDVRISRGXAXPPPXXXA*NSRNPP 258
PG +AA P + GG + FHP H +FK VR + P PP
Sbjct: 221 PGKAAAAPGGRIGYSGGGQGFHPQHHSMFKYVRPGATLGAPLGGAPTATGQFRPPGPP 278
>07_03_1702 +
28828635-28828905,28831222-28831448,28831601-28832233,
28832311-28832760
Length = 526
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 378 TTTLYPAGSVVSRRSNREGSCPSISGTRV 464
T LYPAG+VVSR++ RE S+ G RV
Sbjct: 385 TLRLYPAGAVVSRQALRE---LSLGGVRV 410
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 330 VAARIRQ*SDDPSGASTTTLYPAGSVVSRRSNR 428
+ +++RQ +DP GA T LY +S +NR
Sbjct: 287 IESKLRQIEEDPEGAGTAHLYSVTQKISGVANR 319
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 415 EGPTEKARAPQYL--GHGWAVSPAGRXRREVSGLDPNHSW 528
EG E+A+ + + G+GW + R + +SG + N W
Sbjct: 949 EGVEEEAKNARSITSGNGWKIHELNRKEKGISGFEKNRFW 988
>03_05_0844 + 28139996-28140736
Length = 246
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/48 (41%), Positives = 22/48 (45%)
Frame = -3
Query: 564 GGGGXWRL*RSPPRVVGVQTTDLPTASPSW*HSPPVSQILRGTSLLCW 421
GGGG W R PR V VQT + + SW PPV R CW
Sbjct: 166 GGGGGWWPRRCQPRQVVVQT----SVALSWPVCPPVRP--RPMRSSCW 207
>03_02_0198 + 6344952-6347483
Length = 843
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +1
Query: 22 GSXIPCNVCSGPLEV-CSIPAGIVIPGSAATPXXHLRGGDKQFHPLEHH--VFKXVRTDV 192
GS P VCS C PAG S + GG + HPLE H F + V
Sbjct: 307 GSCGPFGVCSNATNPECRCPAGFEPRSSEEWRLENAAGGCVRRHPLECHGDGFLALPYTV 366
Query: 193 RISRGXAXPP 222
R+ G P
Sbjct: 367 RLPNGSVEAP 376
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +2
Query: 554 PPPPQMGTGSSTRLVLSCTCSIRAFPAFTAVG----PVQARVYSVQPP 685
PPPP G G LS R PA +A G P A + V PP
Sbjct: 48 PPPPGSGPGPQRPSYLSVALRRRGPPAGSAAGTPAPPRAAAAFDVAPP 95
>12_01_1084 + 11276330-11276476,11276594-11276974
Length = 175
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 396 AGSVVSRRSNREGSCPSISGTRVGCVTSW 482
AG VSRRSN G +G R+ C+ W
Sbjct: 23 AGLPVSRRSNSAGLGSVSNGGRISCMQVW 51
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 402 SVVSRRSNREGSCPSISGTRVGCVT--SW 482
SVV ++ + EG+C S+ G R G +T SW
Sbjct: 975 SVVLQKDHGEGACKSVEGERRGVLTAGSW 1003
>05_05_0017 + 21546434-21546841
Length = 135
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 509 KPLTSLRXLPAGDTAHPCPRY*GARAFSVGPSADHRSSRIQCGGRRSTW 363
+P+ + PAG T P P A A + P AD +SS TW
Sbjct: 71 EPVPAPSSSPAGATTTPAPAAPAATAPAPSPEADGKSSGAAAAPPLMTW 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,495,888
Number of Sequences: 37544
Number of extensions: 512494
Number of successful extensions: 1408
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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