Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0720
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 31 1.2
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 1.5
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.9
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 4.9
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 4.9
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 28 6.5
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 28 8.6
SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031) 28 8.6
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22) 28 8.6
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12) 28 8.6
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +2
Query: 344 KAVIRRSKWSVDHHTVSGWIGGQQKVQQRRLVPLNIWDTGGLCHQLGXAVGRSVVWTPTT 523
K V+R SKW V H S W+ K R + W GG H G G + TPT+
Sbjct: 448 KWVVRNSKWVVRH---SKWVVRNSKWVVRN----SKWQMGGPPHMAGQMPGPQPMGTPTS 500
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.9 bits (59), Expect(2) = 1.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 625 FSCIYCCWTCTGTRILGTAPVDST 696
+ C YCC +CT T T +T
Sbjct: 513 YCCYYCCCSCTATTATATTTATAT 536
Score = 21.0 bits (42), Expect(2) = 1.5
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 553 TTTSADGYWLKHAVSPLLHMLYQSFSCIYCCW 648
TTT+A +P+L Y C Y C+
Sbjct: 450 TTTTATTTTTTTTTAPVLRYCYCYCYCYYYCY 481
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 696 RRIHGGCTEYTRACTGPT--AVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
R GG TR+CT P A G +L+ +E P P+ G G W
Sbjct: 445 RECDGGVHYRTRSCTNPVPFAGGEGCSLLGPARESRQCNTNPCPVNGAYGPW 496
>SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 1 RWIPRAAGSXIPCNVCSGPLEVCSIPAGI 87
RW+P A +PC VC LE+ ++ GI
Sbjct: 108 RWVPLNA-CLVPCTVCLQKLEMVAVDVGI 135
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
GG TR CT P + GK +E + P P+ GG
Sbjct: 461 GGIMSRTRTCTNPKPAHGGKECEGDDKETKACGISPCPVNGG 502
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 699 ARRIHGGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
A+ GG TR CT P + GK + ++ P P+ GG
Sbjct: 56 AQSCGGGTRTRTRTCTNPKPSSGGKDCVGDAKQTRECGKAPCPVNGG 102
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQE 601
GG E TR CT P+ N GK + +E
Sbjct: 118 GGKQERTRTCTNPSPSNGGKDCVGDAKE 145
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 699 ARRIHGGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
A+ GG TR CT P + GK + ++ P P+ GG
Sbjct: 41 AQSCGGGTRTRTRTCTNPKPSSGGKDCVGDAKQTRECGKAPCPVNGG 87
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQE 601
GG E TR CT P+ N GK + +E
Sbjct: 103 GGKQERTRTCTNPSPSNGGKDCVGDAKE 130
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQE 601
GG E TR CT P+ N GK + +E
Sbjct: 456 GGKQERTRTCTNPSPSNGGKDCVGDAKE 483
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
GG TR CT P + GK + ++ P P+ GG
Sbjct: 373 GGTRTRTRTCTNPKPSSGGKDCVGDAKQTRECGKAPCPVNGG 414
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 684 GGCTEYTRACTGPTAVNAGKALIEHVQE 601
GG E TR CT P+ N GK + +E
Sbjct: 487 GGKQERTRTCTNPSPSNGGKDCVGDAKE 514
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/91 (26%), Positives = 30/91 (32%)
Frame = +1
Query: 10 PRAAGSXIPCNVCSGPLEVCSIPAGIVIPGSAATPXXHLRGGDKQFHPLEHHVFKXVRTD 189
P G P NVC PL + S G+ D P E +D
Sbjct: 524 PTTNGHEPPANVCDSPLSILSPSTSTSSVGTLNKAEHCSASADLPLPPPEF-------SD 576
Query: 190 VRISRGXAXPPPXXXA*NSRNPPNLLTNTAK 282
+ S PPP ++ PPN TAK
Sbjct: 577 LESSAPIPPPPPQMNNTSAPPPPNKEKQTAK 607
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -3
Query: 681 GCTEYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGGGGXW 547
G + R CT P+ + GK ++E P P+ GG W
Sbjct: 107 GVQKRVRTCTNPSPLFGGKDCAGAMEETKACNTHPCPVNGGFSEW 151
>SB_4770| Best HMM Match : Exo_endo_phos (HMM E-Value=0.031)
Length = 599
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 587 CLSQYPSAEVVVLGDFNAHHQEWLGSK 507
CLSQ+P + + GDFN + SK
Sbjct: 128 CLSQHPECLISISGDFNTSSTNFSASK 154
>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
Length = 1115
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +1
Query: 394 RLDRWSAEGPTEKARAPQYLGHGWAVSP-AGRXRREVSGLDP 516
R +RW TE+ P + GWA +P R E G P
Sbjct: 158 RRNRWDETPKTERGETPGHSTPGWAETPRTDRMGAETPGATP 199
>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
Length = 495
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 454 GHGWAVSPAGRXRREVSGLDPNHSWW*ALKSPXTTTSADGYWLKHAVS 597
GHG A A R S + + WW T A+GY L+H S
Sbjct: 365 GHGKATDAADRRPSWCSTSNKPNQWWKIDFGDKRTVVANGYRLRHGWS 412
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,081,288
Number of Sequences: 59808
Number of extensions: 509625
Number of successful extensions: 1442
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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