Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0720
(713 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.54
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.54
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.54
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.54
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.54
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.9
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.0
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ TW FDD
Sbjct: 103 PPGIFKSTCKIDITWFPFDD 122
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ TW FDD
Sbjct: 103 PPGIFKSTCKIDITWFPFDD 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ TW FDD
Sbjct: 171 PPGIFKSTCKIDITWFPFDD 190
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ TW FDD
Sbjct: 171 PPGIFKSTCKIDITWFPFDD 190
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.54
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ TW FDD
Sbjct: 140 PPGIFKSTCKIDITWFPFDD 159
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ W FDD
Sbjct: 103 PPGIFKSTCKMDVAWFPFDD 122
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ W FDD
Sbjct: 103 PPGIFKSTCKIDIAWFPFDD 122
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ W FDD
Sbjct: 103 PPGIFKSTCKMDIAWFPFDD 122
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 253 PPNLLTNTAKLFDTWSSFDD 312
PP + +T K+ W FDD
Sbjct: 103 PPGIFGSTCKIDIAWFPFDD 122
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 5.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 672 EYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
EY TG T V G++ Q TNRV + GG
Sbjct: 1284 EYQFWVTGSTRVGEGQSSKVAAQVPTNRVPARITSFGG 1321
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 5.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 672 EYTRACTGPTAVNAGKALIEHVQERTNRVLEPVPICGG 559
EY TG T V G++ Q TNRV + GG
Sbjct: 1280 EYQFWVTGSTRVGEGQSSKVAAQVPTNRVPARITSFGG 1317
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,311
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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