Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0720
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    31   0.76 
At2g34790.1 68415.m04272 FAD-binding domain-containing protein s...    30   1.3  
At1g21170.1 68414.m02647 expressed protein                             29   4.0  
At3g57200.1 68416.m06368 hypothetical protein                          28   5.3  
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P...    28   5.3  
At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia l...    28   7.1  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    28   7.1  
At1g28760.1 68414.m03537 expressed protein ; expression supporte...    28   7.1  

>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 111 GRSRPWYNNASRDAAHLKRTAAYVAWDXATCSPGD 7
           G + PW N+ + D  H  +T  ++ WD  T    D
Sbjct: 119 GGTPPWRNSVTHDEPHTSKTKNWLIWDVITIDGSD 153



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 99  PWYNNASRDAAHLKRTAAYVAWD 31
           PW N+ + D  HL  T   ++WD
Sbjct: 347 PWRNSVTHDVPHLSATQDSISWD 369


>At2g34790.1 68415.m04272 FAD-binding domain-containing protein
           similar to  SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 532

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 648 PTAVNAGKALIE-HVQERTNRVLEPVPICGGGGXW 547
           P A+ AGK+L + H + +++ V EP+P+ G  G W
Sbjct: 363 PEALLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLW 397


>At1g21170.1 68414.m02647 expressed protein
          Length = 1090

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 330 VAARIRQ*SDDPSGASTTTLYPAGSVVSRRSNR 428
           + +++++  DDP G+ TT L+     V+ R+NR
Sbjct: 288 IESKLKRIEDDPDGSGTTHLFNCMKSVTSRANR 320


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 368 WSVDHHTVSGWIGGQQKVQQRRLV 439
           WS+DHH   G +  Q+K   RR V
Sbjct: 58  WSIDHHEFPGMVTTQEKRSLRRSV 81


>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
           At1g25886, At4g03300
          Length = 1139

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 355 QTIQVERRPPHCIRLDRWSAEGPTEKARAPQYLGH 459
           + + VE  PP    LDR+ +E        P+Y+ H
Sbjct: 50  EDLTVEELPPRLFALDRYPSETKMNAYSKPEYISH 84


>At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 563

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 1   RWIPRAAGSXIPCNVCSGPLEVCSIPAGIVIPGSAATPXXHLRG 132
           +WI RAA   IP +  SGP +VC I  G  I    + P     G
Sbjct: 123 KWIERAA--RIPVDGQSGPADVCVIELGGTIGDIESMPFIEALG 164


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 389 VSGWIGGQQKVQQRRLVPLNIWDTGGLCHQLG-XAVGRSVVWTPTT 523
           +SGW GG + V    ++   I+ TGG  H+ G  A   S + +P++
Sbjct: 232 LSGWRGGNESVICNNVLYFMIYSTGGSDHRHGLIASNLSSIGSPSS 277


>At1g28760.1 68414.m03537 expressed protein ; expression supported
           by MPSS
          Length = 476

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 564 GGGGXWRL*RSPPRVVGVQTTDLPTASPS 478
           GGGG W+  +S P   G  + D+  +SPS
Sbjct: 355 GGGGLWKSAKSVPSYSGSPSYDVIVSSPS 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,508
Number of Sequences: 28952
Number of extensions: 342759
Number of successful extensions: 815
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)