Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0719
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...   116   4e-25
UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    62   2e-08
UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261; ro...    47   5e-04
UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1; ...    44   0.004
UniRef50_Q9R4I2 Cluster: Beta-lactamase; n=5; Gammaproteobacteri...    38   0.31 
UniRef50_Q18237 Cluster: Putative uncharacterized protein; n=2; ...    37   0.41 

>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score =  116 bits (280), Expect = 4e-25
 Identities = 53/76 (69%), Positives = 55/76 (72%)
 Frame = +3

Query: 429 WHFSGKCARNPYLFIFLNTFKYVSAHEQ*P**MLQ*Y*KRKSMSIQHFPCRPYSLXCGIC 608
           WHFSGKCARNPYLFIFLNTFKYVSAHE           K++      FPCRPYSL CGI 
Sbjct: 24  WHFSGKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGIL 83

Query: 609 LPCFCSPRNAGESKRC 656
             CFCSPRNAGESKRC
Sbjct: 84  PSCFCSPRNAGESKRC 99


>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 61.7 bits (143), Expect = 2e-08
 Identities = 36/71 (50%), Positives = 36/71 (50%)
 Frame = -3

Query: 425 DAPCSGALSAAGXXXXXXXXXXXXXXXXXXXXAXFPXXLATXAGFPRQALNRGLPLGSDL 246
           DAPCSGALSAAG                    A FP  LAT AGFPRQALNRGLPLG   
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 245 VLYGTSTPKNL 213
                  PK L
Sbjct: 62  SALRHLDPKKL 72


>UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261;
           root|Rep: Beta-lactamase TEM precursor - Escherichia
           coli
          Length = 286

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 24/36 (66%), Positives = 24/36 (66%)
 Frame = +1

Query: 571 FRVALIPXXXXXXXXXXXHPETLVKVKDAEVQLGAR 678
           FRVALIP           HPETLVKVKDAE QLGAR
Sbjct: 6   FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGAR 41


>UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Pelagibacter ubique HTCC1002|Rep: Putative
           uncharacterized protein - Candidatus Pelagibacter ubique
           HTCC1002
          Length = 26

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -1

Query: 664 ELQHLLLSPAFLGEQKXGRQMPQXRE 587
           +LQHLLLSPAFLGEQK   +MPQ RE
Sbjct: 1   DLQHLLLSPAFLGEQKQEGKMPQKRE 26


>UniRef50_Q9R4I2 Cluster: Beta-lactamase; n=5;
           Gammaproteobacteria|Rep: Beta-lactamase - Shigella
           flexneri
          Length = 52

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 625 HPETLVKVKDAEVQLGAR 678
           HPETLVKVKDAE QLGAR
Sbjct: 4   HPETLVKVKDAEDQLGAR 21


>UniRef50_Q18237 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 1076

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 552 SMSIQHFPCRPYSLXCGICLPCFCSPRNAGESKRC*SSV--GCTRXGYIE 695
           +M + H      S+ CGICL C  SP++ G S+R    +  GCT  GY+E
Sbjct: 45  NMILGHNGSGKSSIICGICLACGGSPKSLGRSERIVEYIRHGCTE-GYVE 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,669,455
Number of Sequences: 1657284
Number of extensions: 11767427
Number of successful extensions: 25394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25382
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)