Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0719
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1586 - 34621945-34623366                                         28   6.2  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    28   6.2  

>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 173 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 265
           Y    PL +P+  SSF G  C  A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = -1

Query: 652 LLLSPAFLGEQKXGRQ-----MPQXRE*GRHGKC*ILILFL 545
           LLL PA L E K G Q     MP+ R  GRH +C    +FL
Sbjct: 833 LLLVPAMLEESKEGIQRWQLTMPECRYAGRHMECEDTHMFL 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,915,276
Number of Sequences: 37544
Number of extensions: 323317
Number of successful extensions: 682
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)