Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0719
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr...    37   0.012
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   5.5  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   9.7  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   9.7  

>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
           protein C27A2.1 protein.
          Length = 1076

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 552 SMSIQHFPCRPYSLXCGICLPCFCSPRNAGESKRC*SSV--GCTRXGYIE 695
           +M + H      S+ CGICL C  SP++ G S+R    +  GCT  GY+E
Sbjct: 45  NMILGHNGSGKSSIICGICLACGGSPKSLGRSERIVEYIRHGCTE-GYVE 93


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 573 PCRPYSLXCGICLPCFCSPRNAGESKRC*SS 665
           PC PYS    +C PC+CS  N  ES R  SS
Sbjct: 194 PCCPYSHHRRLCDPCYCS--NRPESHRDSSS 222


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 681  TSCTQLNFSIFYFHQRFWVSKNXEGKCRKXGNKGDTE 571
            T+CT +  ++ Y HQ   V K+    C + GN   T+
Sbjct: 1703 TNCTTMRIALEYLHQNGAVLKSPLPVCSRNGNYDQTQ 1739


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +2

Query: 59  IPYKSKE*TEIGLSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGPLREPSP*SSFLGSRCR 238
           + Y++ E T+ GL  V    K+  LK  D ++    T +     L E S  S+ +  +C 
Sbjct: 244 LSYQTTEVTKKGLGKVEE-KKAVALK--DGHMDDCYTFFMA---LEEESK-SARVIRKCS 296

Query: 239 KALNRTLKGAPDLELDGESRRXW 307
             LN+ LKG   L+L+G     W
Sbjct: 297 SVLNKFLKGIDALQLEGNQSTDW 319


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +2

Query: 59  IPYKSKE*TEIGLSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGPLREPSP*SSFLGSRCR 238
           + Y++ E T+ GL  V    K+  LK  D ++    T +     L E S  S+ +  +C 
Sbjct: 365 LSYQTTEVTKKGLGKVEE-KKAVALK--DGHMDDCYTFFMA---LEEESK-SARVIRKCS 417

Query: 239 KALNRTLKGAPDLELDGESRRXW 307
             LN+ LKG   L+L+G     W
Sbjct: 418 SVLNKFLKGIDALQLEGNQSTDW 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,647
Number of Sequences: 27780
Number of extensions: 282636
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)