Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0719
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   1.7  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.2  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    29   3.9  
At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    28   5.1  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.8  
At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot...    27   9.0  
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot...    27   9.0  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   9.0  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 82  DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 183
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 138 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 242
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 4/33 (12%)
 Frame = -3

Query: 578 TRKML-NTHTLPFSILLKHLSGLLFM---SGYI 492
           TR ++ NTH + +S++LK LSGLL +   +GYI
Sbjct: 683 TRALIENTHLIKWSLVLKALSGLLALICGNGYI 715


>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 466 CLFF*IHSNMYPLMNNNPDKCFNNI 540
           CL F +   +YPL +   D C NNI
Sbjct: 13  CLLFDLDDTLYPLSSGLSDACSNNI 37


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 144 TPTSKGEKPSIRAMAHYVNHHP 209
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 215 SFLGSRCRKALNRTLKGAPDLELDGESRRXWRXRXGR 325
           S   ++   +L R LKG+PD+ L G  ++    R GR
Sbjct: 256 SLFATKTEASLLRMLKGSPDVYLSGPIKQYITDRGGR 292


>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 215 SFLGSRCRKALNRTLKGAPDLELDGESRRXWRXRXGR 325
           S   ++   +L R LKG+PD+ L G  ++    R GR
Sbjct: 256 SLFATKTEASLLRMLKGSPDVYLSGPIKQYITDRGGR 292


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 70   IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 165
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,440
Number of Sequences: 28952
Number of extensions: 260143
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)