Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing f... 173 4e-42
UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing f... 119 8e-26
UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2... 119 8e-26
UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=... 115 1e-24
UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subu... 95 1e-18
UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p... 87 3e-16
UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome sh... 83 6e-15
UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2) ... 81 3e-14
UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole... 61 2e-08
UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3; ... 50 4e-05
UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein; ... 46 7e-04
UniRef50_Q10S20 Cluster: RNA recognition motif family protein, e... 46 0.001
UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma j... 45 0.002
UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large ... 44 0.003
UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=... 44 0.005
UniRef50_O23212 Cluster: Splicing factor-like protein; n=22; Euk... 44 0.005
UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein... 42 0.015
UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein PF07_0... 41 0.026
UniRef50_A5KAH2 Cluster: Putative uncharacterized protein; n=1; ... 40 0.045
UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core eud... 40 0.060
UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, wh... 38 0.18
UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary... 38 0.24
UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4; ... 38 0.24
UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11... 38 0.32
UniRef50_Q00YN9 Cluster: RNA recognition motif; n=2; Ostreococcu... 37 0.42
UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genom... 36 0.97
UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;... 35 1.7
UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=... 35 2.2
UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KE... 35 2.2
UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella ve... 35 2.2
UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyc... 34 3.0
UniRef50_UPI00006CBD24 Cluster: hypothetical protein TTHERM_0015... 34 3.9
UniRef50_Q4UHC8 Cluster: Splicing factor, putative; n=3; Piropla... 34 3.9
UniRef50_Q3R372 Cluster: Putative uncharacterized protein; n=2; ... 33 5.2
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 33 6.8
UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2; ... 33 6.8
UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA... 33 9.0
UniRef50_A3VDA1 Cluster: Transporter, AcrB/AcrD/AcrF family prot... 33 9.0
>UniRef50_UPI00015B503E Cluster: PREDICTED: similar to splicing
factor u2af large subunit; n=2; Apocrita|Rep: PREDICTED:
similar to splicing factor u2af large subunit - Nasonia
vitripennis
Length = 547
Score = 173 bits (421), Expect = 4e-42
Identities = 84/90 (93%), Positives = 85/90 (94%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQA LYVGNIPFGVTEEE
Sbjct: 193 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQARRLYVGNIPFGVTEEEM 252
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
MEFFNQQMHLSGLAQAAGNPVLACQ+ L K
Sbjct: 253 MEFFNQQMHLSGLAQAAGNPVLACQINLDK 282
Score = 71.7 bits (168), Expect = 2e-11
Identities = 33/41 (80%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P IN DKNFAFLEFRSIDETTQAMAFDGINFKG SL+
Sbjct: 272 PVLACQINLDKNFAFLEFRSIDETTQAMAFDGINFKGQSLK 312
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 1/24 (4%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVP 675
LKIRRPHDYQPMPG T+NP++NVP
Sbjct: 311 LKIRRPHDYQPMPGMTDNPSMNVP 334
>UniRef50_UPI0000EBDD2E Cluster: PREDICTED: similar to splicing
factor U2AF homolog - mouse; n=2; Bos taurus|Rep:
PREDICTED: similar to splicing factor U2AF homolog -
mouse - Bos taurus
Length = 330
Score = 119 bits (286), Expect = 8e-26
Identities = 61/94 (64%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
FG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P + IN DKNFAFLEFRS+DETTQAMAFDGI F+G SL+
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 225
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 1/24 (4%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVP 675
LKIRRPHDYQP+PG +ENP++ VP
Sbjct: 224 LKIRRPHDYQPLPGMSENPSVYVP 247
>UniRef50_P26368 Cluster: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)); n=44; Eumetazoa|Rep:
Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor
65 kDa subunit) (U2 snRNP auxiliary factor large
subunit) (hU2AF(65)) - Homo sapiens (Human)
Length = 475
Score = 119 bits (286), Expect = 8e-26
Identities = 61/94 (64%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
FG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P + IN DKNFAFLEFRS+DETTQAMAFDGI F+G SL+
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 225
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/30 (73%), Positives = 26/30 (86%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVPAGVXST 693
LKIRRPHDYQP+PG +ENP++ VP GV ST
Sbjct: 224 LKIRRPHDYQPLPGMSENPSVYVP-GVVST 252
>UniRef50_P90978 Cluster: Splicing factor U2AF 65 kDa subunit; n=7;
Bilateria|Rep: Splicing factor U2AF 65 kDa subunit -
Caenorhabditis elegans
Length = 496
Score = 115 bits (276), Expect = 1e-24
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+ LYVGNIPFG EE
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 200
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
++FFNQQMHL GLAQA GNP+L CQ+ L K
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQINLDK 230
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ PG P IN DKNFAF+EFRSIDETT MAFDGINF G L+
Sbjct: 213 LAQAPGN--PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 260
>UniRef50_UPI000065F936 Cluster: Splicing factor U2AF 65 kDa subunit
(U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)).; n=1; Takifugu
rubripes|Rep: Splicing factor U2AF 65 kDa subunit (U2
auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary
factor large subunit) (hU2AF(65)). - Takifugu rubripes
Length = 555
Score = 95.1 bits (226), Expect = 1e-18
Identities = 61/120 (50%), Positives = 67/120 (55%), Gaps = 34/120 (28%)
Frame = +3
Query: 255 GFEHITPLQYKAMQ--------------------------AAGQIPANIVADT------- 335
GFEHITP+QYKAMQ AAGQIPA + T
Sbjct: 85 GFEHITPMQYKAMQGTKAGLNTRPSGFSRTRLPFRDARVSAAGQIPATALLPTMTPDGLA 144
Query: 336 -PQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
VPVVGS +TRQA LYVGNIPFG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 145 VTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQI 204
>UniRef50_Q8T8Y4 Cluster: AT16577p; n=3; Sophophora|Rep: AT16577p -
Drosophila melanogaster (Fruit fly)
Length = 449
Score = 87.4 bits (207), Expect = 3e-16
Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
G+ H+TP Q+KAM A+GQI + I++D S ITRQA LYVGNIPFGVT+EE
Sbjct: 68 GYNHLTPQQHKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTDEEM 127
Query: 435 MEFFNQQMHLSGLAQAA-----GNPVLACQLILIK 524
M+FFN Q+ G + GN VL CQ L K
Sbjct: 128 MQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEK 162
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 512 NFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N +KNFAFLEFRSIDE +QA+ FDG+ F+G +L+
Sbjct: 159 NLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLK 192
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 607 LKIRRPHDYQPMP 645
LKIRRPHDYQP+P
Sbjct: 191 LKIRRPHDYQPVP 203
>UniRef50_Q4SAX3 Cluster: Chromosome 3 SCAF14679, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 3 SCAF14679, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 600
Score = 83.0 bits (196), Expect = 6e-15
Identities = 61/125 (48%), Positives = 70/125 (56%), Gaps = 39/125 (31%)
Frame = +3
Query: 255 GFEHITPLQYKAMQ----------------------AAGQIPANIVADTPQAA------- 347
GFEHITPLQYKAMQ AAGQIP + T +A
Sbjct: 96 GFEHITPLQYKAMQGRAPPRLPGPAPRLPSVSLWPPAAGQIPTMALLATAASAGVVAAPT 155
Query: 348 -VPVVGSTITRQAXWLYVGNIPFGVTE--------EETM-EFFNQQMHLSGLAQAAGNPV 497
VPV GS +TRQA LYVGNIPFG+TE +E+M EFFN QM L+GL+QA NPV
Sbjct: 156 PVPVAGSQMTRQARRLYVGNIPFGLTEALRRLCSPQESMAEFFNAQMRLAGLSQAPSNPV 215
Query: 498 LACQL 512
LA Q+
Sbjct: 216 LAVQI 220
>UniRef50_UPI0000F2E898 Cluster: PREDICTED: similar to U2 (RNU2)
small nuclear RNA auxiliary factor 2,; n=1; Monodelphis
domestica|Rep: PREDICTED: similar to U2 (RNU2) small
nuclear RNA auxiliary factor 2, - Monodelphis domestica
Length = 386
Score = 80.6 bits (190), Expect = 3e-14
Identities = 42/65 (64%), Positives = 46/65 (70%), Gaps = 8/65 (12%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTE 425
FG+TE
Sbjct: 158 FGITE 162
>UniRef50_Q4TF95 Cluster: Chromosome undetermined SCAF4753, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4753,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 351
Score = 61.3 bits (142), Expect = 2e-08
Identities = 42/82 (51%), Positives = 46/82 (56%), Gaps = 18/82 (21%)
Frame = +3
Query: 234 LLGCTAAGFEHITPLQYKAMQ----------AAGQIPANIVADTPQ--------AAVPVV 359
+LG GFEHITPLQYKAMQ AAGQIP A + VPV
Sbjct: 72 VLGRPPPGFEHITPLQYKAMQGLPSVSLWPPAAGQIPNYGAAGHGRQRGRGGAPTPVPVA 131
Query: 360 GSTITRQAXWLYVGNIPFGVTE 425
GS +TRQA LYVGN PFG+TE
Sbjct: 132 GSQMTRQARRLYVGNNPFGLTE 153
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = +2
Query: 539 EFRSIDETTQAMAFDGINFKGPSLR 613
+FRS+DETTQAMAFDGI F+G +L+
Sbjct: 233 QFRSVDETTQAMAFDGIVFQGQALK 257
Score = 41.1 bits (92), Expect = 0.026
Identities = 17/24 (70%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVP 675
LKIRRPHDY+P+PG +E PA +VP
Sbjct: 256 LKIRRPHDYRPLPGISEQPAFHVP 279
>UniRef50_Q4P3F0 Cluster: Putative uncharacterized protein; n=3;
Fungi/Metazoa group|Rep: Putative uncharacterized
protein - Ustilago maydis (Smut fungus)
Length = 727
Score = 50.4 bits (115), Expect = 4e-05
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +2
Query: 446 QSTNASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
Q +G PG +P +N DK +AF+EFR +E T AM+FDGI F+ SL+
Sbjct: 376 QMLKLKLGTEPG--EPAVSAQVNVDKGYAFVEFRHPEEATNAMSFDGIVFQAQSLK 429
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
RQA LYVGNI E+ + FFN+QM L G P ++ Q+
Sbjct: 350 RQARRLYVGNITHQANEQNIVAFFNEQMLKLKLGTEPGEPAVSAQV 395
>UniRef50_Q54LV5 Cluster: RNA-binding region-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: RNA-binding
region-containing protein - Dictyostelium discoideum AX4
Length = 671
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
+Q+ +YVGNIP G+++ E MEFFN + + L G PV+ CQ+
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFNAAVLAANLNTKPGPPVVFCQI 310
Score = 46.4 bits (105), Expect = 7e-04
Identities = 26/60 (43%), Positives = 33/60 (55%)
Frame = +2
Query: 434 NGVFQSTNASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N + N + PGP P IN K FAF+EFRS +E T AM FDGI+ K +L+
Sbjct: 289 NAAVLAANLNTKPGP----PVVFCQINAPKCFAFIEFRSPEEATNAMRFDGISLKNFTLK 344
>UniRef50_Q10S20 Cluster: RNA recognition motif family protein,
expressed; n=7; Oryza sativa|Rep: RNA recognition motif
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 964
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 485 RQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+QPC IN DK AF+EF + ++ T A++FDG +F G SL+
Sbjct: 510 KQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLK 552
>UniRef50_Q5C2P7 Cluster: SJCHGC09464 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09464 protein - Schistosoma
japonicum (Blood fluke)
Length = 159
Score = 44.8 bits (101), Expect = 0.002
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVA 329
GFEH+TP QYKA+Q +GQ+P N+ A
Sbjct: 134 GFEHVTPAQYKALQTSGQVPVNVYA 158
>UniRef50_UPI0000498FCC Cluster: U2 snRNP auxiliary factor large
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U2
snRNP auxiliary factor large subunit - Entamoeba
histolytica HM-1:IMSS
Length = 712
Score = 44.4 bits (100), Expect = 0.003
Identities = 14/37 (37%), Positives = 30/37 (81%)
Frame = +2
Query: 503 LPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ +N+++++AFLEFR+++E +A++ DG+ KG S++
Sbjct: 184 IEVNYERSYAFLEFRTLEEAVKALSLDGLTIKGASVK 220
>UniRef50_Q0UUV3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 606
Score = 44.0 bits (99), Expect = 0.004
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Frame = +3
Query: 252 AGFEHITPLQYK---------AMQAAGQIPANIVA----DTPQAAVPVVGSTITRQAXWL 392
AG+E+IT Q K A +AA P+ + A A+ + ++Q+ L
Sbjct: 229 AGYENITAEQAKLSGMFPLPGAPRAAPMDPSKLAAFMSPSAGTASAAALAPGASKQSKRL 288
Query: 393 YVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG-NPVLACQLILIKILHSL 539
YV N+P G T EE +EFFN Q L+GL +G +P L+ Q+ K +L
Sbjct: 289 YVHNLPSGTTSEELLEFFNLQ--LNGLNVVSGQDPCLSAQIASSKTYAAL 336
>UniRef50_Q3E9P9 Cluster: Uncharacterized protein At4g36690.3; n=9;
Magnoliophyta|Rep: Uncharacterized protein At4g36690.3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 565
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
F A++G GPG + IN +K FAF+E RS++E + AM+ DGI F+G ++
Sbjct: 259 FSQVMAAVGGNTAGPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK 316
>UniRef50_O23212 Cluster: Splicing factor-like protein; n=22;
Eukaryota|Rep: Splicing factor-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 573
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
F A++G GPG + IN +K FAF+E RS++E + AM+ DGI F+G ++
Sbjct: 259 FSQVMAAVGGNTAGPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK 316
>UniRef50_Q5KFM4 Cluster: RRNA primary transcript binding protein,
putative; n=2; Filobasidiella neoformans|Rep: RRNA
primary transcript binding protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 651
Score = 41.9 bits (94), Expect = 0.015
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 467 GPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
G G+ P IN D+NFAF+E + ++ T A+ DG+ G SLR
Sbjct: 303 GMADGKEDPVKQCQINNDRNFAFIELHTPEQATAALELDGVVLDGASLR 351
Score = 39.5 bits (88), Expect = 0.079
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAG 488
IPA VA + PV RQ LY+G I + E++ +FFN M G+A
Sbjct: 256 IPATFVAGAFPPSNPV------RQNNRLYIGGIKEDMQEQQIQDFFNNLMKEKGMADGKE 309
Query: 489 NPVLACQL 512
+PV CQ+
Sbjct: 310 DPVKQCQI 317
>UniRef50_Q8IBU0 Cluster: Putative uncharacterized protein
PF07_0066; n=3; Plasmodium|Rep: Putative uncharacterized
protein PF07_0066 - Plasmodium falciparum (isolate 3D7)
Length = 1125
Score = 41.1 bits (92), Expect = 0.026
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 494 CFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
C I D ++AF+EFR+I +T+ M +GINF G +LR
Sbjct: 689 CLKACIRGDTHYAFVEFRNIQDTSNCMLLNGINFYGNNLR 728
>UniRef50_A5KAH2 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1050
Score = 40.3 bits (90), Expect = 0.045
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 494 CFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
C I D ++AF+EFR++ +T+ M +GINF G +LR
Sbjct: 624 CLKACIRGDTHYAFVEFRTLQDTSNCMLLNGINFYGNNLR 663
>UniRef50_A2Q4R3 Cluster: RNA-binding region RNP-1; n=2; core
eudicotyledons|Rep: RNA-binding region RNP-1 - Medicago
truncatula (Barrel medic)
Length = 257
Score = 39.9 bits (89), Expect = 0.060
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 467 GPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFK 598
G G + IN +K FAF+E R+++E + AMA DGI F+
Sbjct: 207 GNSAGSGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFE 250
>UniRef50_A0EAC5 Cluster: Chromosome undetermined scaffold_86, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_86,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 402
Score = 38.3 bits (85), Expect = 0.18
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 446 QSTNASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLRF 616
+S A + PG P + + + + F++FRSI+ET A+ D IN++G L+F
Sbjct: 113 ESHGAVLDPG----DPVIQVQLQPGQKYCFVQFRSIEETEAALQIDTINYQGKPLKF 165
Score = 34.3 bits (75), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
LY+GN+P V ++ + QQM G G+PV+ QL
Sbjct: 90 LYLGNLPDNVDKDHLHNYIRQQMESHGAVLDPGDPVIQVQL 130
>UniRef50_Q5CXC0 Cluster: Splicing factor U2AF U2 snRNP auxiliary
factor large subunit; 3 RRM domains; n=3;
Cryptosporidium|Rep: Splicing factor U2AF U2 snRNP
auxiliary factor large subunit; 3 RRM domains -
Cryptosporidium parvum Iowa II
Length = 492
Score = 37.9 bits (84), Expect = 0.24
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLA 503
+YVGN+P G+T E +E+ N+ + + ++ GNPV++
Sbjct: 118 VYVGNLPQGITVTELLEYINRSIIKNSVSHTNGNPVVS 155
>UniRef50_A4RFH0 Cluster: Putative uncharacterized protein; n=4;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 620
Score = 37.9 bits (84), Expect = 0.24
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +3
Query: 366 TITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
T +RQ+ L + N+P G TE+ + F N Q++ + +A+ +P LACQ+
Sbjct: 287 TNSRQSKRLILSNLPAGTTEDSLISFLNLQLNGLNVIEAS-DPCLACQM 334
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFK 598
PC + D +FA +EFRS +TT A A DGI+ +
Sbjct: 328 PCLACQMAPDGSFAMVEFRSPSDTTVAYALDGISME 363
>UniRef50_A2QMQ0 Cluster: Contig An07c0080, complete genome; n=11;
Pezizomycotina|Rep: Contig An07c0080, complete genome -
Aspergillus niger
Length = 598
Score = 37.5 bits (83), Expect = 0.32
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGI 589
PC + D FA LEF+S ++ T A+AFDGI
Sbjct: 287 PCISAQVAQDHTFALLEFKSPNDATVALAFDGI 319
Score = 34.7 bits (76), Expect = 2.2
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +3
Query: 273 PLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQ 452
P+ +QA PA ADT + + +RQA L+V NIP VT E + FFN
Sbjct: 220 PMDPSRLQAFMNQPAGGNADTS-----TLKPSNSRQAKRLFVYNIPESVTGETLLAFFNV 274
Query: 453 QMHLSGLAQAAGNPVLACQL 512
Q++ + Q+ +P ++ Q+
Sbjct: 275 QLNGLNVIQSV-DPCISAQV 293
>UniRef50_Q00YN9 Cluster: RNA recognition motif; n=2;
Ostreococcus|Rep: RNA recognition motif - Ostreococcus
tauri
Length = 412
Score = 37.1 bits (82), Expect = 0.42
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDVHMTTSL 640
KNFAF+EF S E A+A +G+N G ++R ++ T L
Sbjct: 321 KNFAFIEFESNKEALAALALNGMNVGGRNIRVELAKTPRL 360
>UniRef50_A7NXF8 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 902
Score = 35.9 bits (79), Expect = 0.97
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
PC I+ +K A +EF + ++ + A++FDGI+F G L+
Sbjct: 464 PCISCIIHKEKGQALVEFLTPEDASAALSFDGISFSGSILK 504
>UniRef50_A7AR94 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 400
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 434 NGVFQSTNASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N + N + PG PC I+ D ++AF+E R+++E + + GIN+ SLR
Sbjct: 46 NDALTAVNGTSIPG----NPCQKGWISADSHYAFVEMRTMEEASNCIQLSGINYMNYSLR 101
Query: 614 FD 619
+
Sbjct: 102 IN 103
>UniRef50_Q4UCN0 Cluster: Snrnp splicing factor (U2AF), putative;
n=2; Theileria|Rep: Snrnp splicing factor (U2AF),
putative - Theileria annulata
Length = 486
Score = 35.1 bits (77), Expect = 1.7
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 434 NGVFQSTNASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N S N + PG PC I+ D ++AF+E R+++E + M G+N G +++
Sbjct: 125 NQALISVNGTSMPG----NPCLKGWISSDGHYAFIELRTMEEASNCMQLTGLNIMGHNIK 180
>UniRef50_Q3EBP3 Cluster: Uncharacterized protein At2g33435.1; n=2;
Arabidopsis thaliana|Rep: Uncharacterized protein
At2g33435.1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 979
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 488 QPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+PC IN +K+ A +EF + + + A++ DG +F G +L+
Sbjct: 914 EPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLK 955
>UniRef50_Q7RQR4 Cluster: KED; n=3; Plasmodium (Vinckeia)|Rep: KED -
Plasmodium yoelii yoelii
Length = 858
Score = 34.7 bits (76), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 494 CFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
C I D +AF+EFRS+ +T+ M +GI F +LR
Sbjct: 453 CLKACIRGDTRYAFVEFRSLQDTSNCMLLNGIYFYTNNLR 492
>UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1851
Score = 34.7 bits (76), Expect = 2.2
Identities = 25/100 (25%), Positives = 36/100 (36%)
Frame = +2
Query: 197 RPINVHVDVSLRFTGMYRRRIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNT 376
R + D +R +G R +H + + GD G C HT C A G YN
Sbjct: 1620 RRLQAKSDRGIR-SGTEHRCAPGHHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN- 1677
Query: 377 SSAXVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQPC 496
C+ +T H + F PG ++ PC
Sbjct: 1678 ------CKHNTTGEHCELCDDGFYGNTTDGTPGDCKQCPC 1711
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/77 (27%), Positives = 29/77 (37%)
Frame = +2
Query: 266 YHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAXVICRQHTLWRHRRRNNGVF 445
+H + + GD G C HT C A G YN C+ +T H + F
Sbjct: 1538 HHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCELCDDGF 1590
Query: 446 QSTNASIGPGPGRRQPC 496
A PG ++ PC
Sbjct: 1591 YGNAADGTPGDCKQCPC 1607
>UniRef50_Q6C1Y4 Cluster: Similarities with sp|P34761 Saccharomyces
cerevisiae YNL197c; n=1; Yarrowia lipolytica|Rep:
Similarities with sp|P34761 Saccharomyces cerevisiae
YNL197c - Yarrowia lipolytica (Candida lipolytica)
Length = 625
Score = 34.3 bits (75), Expect = 3.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQ 455
LYVGN+P TEEE M+ F++Q
Sbjct: 516 LYVGNLPMNTTEEELMQLFSKQ 537
>UniRef50_UPI00006CBD24 Cluster: hypothetical protein
TTHERM_00151210; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00151210 - Tetrahymena
thermophila SB210
Length = 554
Score = 33.9 bits (74), Expect = 3.9
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 545 RSIDETTQAMAFDGINFKGPSLRF 616
RSI+ET+ M DGI +KG SLRF
Sbjct: 255 RSIEETSACMELDGIIYKGKSLRF 278
>UniRef50_Q4UHC8 Cluster: Splicing factor, putative; n=3;
Piroplasmida|Rep: Splicing factor, putative - Theileria
annulata
Length = 425
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 524 NFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N+ F+EF S++ET +A+ DG+ G LR
Sbjct: 244 NYGFVEFASVEETERALTMDGMTCMGVQLR 273
>UniRef50_Q3R372 Cluster: Putative uncharacterized protein; n=2;
Xylella fastidiosa|Rep: Putative uncharacterized protein
- Xylella fastidiosa Ann-1
Length = 81
Score = 33.5 bits (73), Expect = 5.2
Identities = 23/82 (28%), Positives = 32/82 (39%)
Frame = +2
Query: 239 GMYRRRIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAXVICRQHTLWR 418
G Y R H ++Q AS CQ +H +A + A +CRQ R
Sbjct: 5 GRYLDRTWQAHQQSVQAQASMAQQLCQALSKHGLCKQAEESY-----LAPSVCRQFRAQR 59
Query: 419 HRRRNNGVFQSTNASIGPGPGR 484
R+++ VF G GP R
Sbjct: 60 GLRKHDAVFHEPTCRKGQGPDR 81
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 33.1 bits (72), Expect = 6.8
Identities = 26/79 (32%), Positives = 37/79 (46%)
Frame = +2
Query: 227 LRFTGMYRRRIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAXVICRQH 406
+R + RRR R+ A + DA S + R + GGG D +TSSA R+
Sbjct: 1 MRKSNHRRRRSRSRSASRV--DARVDSIARSLDRTVRRAANGGGGDDAHTSSAMSTSREP 58
Query: 407 TLWRHRRRNNGVFQSTNAS 463
+ RHR + G+ Q AS
Sbjct: 59 RVARHRVQQRGLVQREIAS 77
>UniRef50_Q00880 Cluster: Cutinase negative acting protein; n=2;
Sordariomycetes|Rep: Cutinase negative acting protein -
Nectria haematococca
Length = 507
Score = 33.1 bits (72), Expect = 6.8
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 240 GCTAA-----GFE---HITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLY 395
GCT A GFE L Y + A PA AD + G T++ ++ L+
Sbjct: 304 GCTKAYEAMQGFELDGRALNLDYANARPADANPAGRAADRAKRH----GDTLSPESDTLF 359
Query: 396 VGNIPFGVTEEETMEFFNQ 452
VGN+P V ++ EFF +
Sbjct: 360 VGNLPIDVDQDAVREFFGE 378
>UniRef50_A2AEK1 Cluster: Cleavage stimulation factor, 3' pre-RNA
subunit 2; n=6; Bilateria|Rep: Cleavage stimulation
factor, 3' pre-RNA subunit 2 - Mus musculus (Mouse)
Length = 554
Score = 32.7 bits (71), Expect = 9.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 342 AAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQ 452
A +PV + R ++VGNIP+ TEE+ + F++
Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE 38
>UniRef50_A3VDA1 Cluster: Transporter, AcrB/AcrD/AcrF family protein;
n=10; Rhodobacterales|Rep: Transporter, AcrB/AcrD/AcrF
family protein - Rhodobacterales bacterium HTCC2654
Length = 1272
Score = 32.7 bits (71), Expect = 9.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 288 AMQAAGQIPANIVADTPQAAVPVVGST-ITRQAXWLYVGNIPFGVTEEETMEFFNQQMHL 464
A+ A +I AN PV + I R WL GN+P G+ E +F +Q
Sbjct: 935 AVAEADRIIANAANPDDYRKTPVTSTERIERITEWLEAGNLPTGIDYEWAGDFADQSEST 994
Query: 465 SGLAQAAGNPVLACQLILIKILHS 536
+ L +A + +IL+ +S
Sbjct: 995 AFLGKAFAGALFLMFIILLAQFNS 1018
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,416,382
Number of Sequences: 1657284
Number of extensions: 13861733
Number of successful extensions: 37034
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 35558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37017
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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