Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0718
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    31   0.16 
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.49 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.1  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   1.5  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    27   3.5  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    26   4.6  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   6.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   6.0  

>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +3

Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
           ++VGNIP+ V+E++  E FNQ
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQ 29


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
           +YVGNIP+ + EE+ ++ F Q
Sbjct: 7   VYVGNIPYEMAEEQVIDIFKQ 27


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
           ++VG +P   TEEE   FFNQ
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQ 269


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 270 TPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTI 371
           +P+ YKA+ A   +P   + + P+A VP   S I
Sbjct: 23  SPITYKALHANSPLPRCRIIEPPRATVPEAVSNI 56


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 346 PCRWWVRL*HVKRXGYMSATYPLASP 423
           P RWWV   H    G + A Y L  P
Sbjct: 550 PLRWWVFRFHSLNAGIIQAAYALCFP 575


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
           +Q+  +YVGN+ F  TEE+    F++
Sbjct: 29  KQSNCVYVGNLSFYTTEEQIYALFSK 54


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 390 LYVGNIPFGVTEEETMEFFNQQM 458
           +YVGN+P   +EEE    F+ Q+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQV 450


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 479 GRRQPCFGLPINFDK----NFAFLEFRS 550
           G + PC  LPI F K    N A+L FRS
Sbjct: 646 GEQNPCGKLPITFPKKLKDNPAYLSFRS 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,953
Number of Sequences: 5004
Number of extensions: 54480
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)