Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178... 48 1e-05
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 48 1e-05
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 46 4e-05
06_01_1037 - 8140602-8140782,8141489-8141545,8141649-8141845,814... 36 0.024
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 29 2.7
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 2.7
03_05_0906 + 28671977-28672111,28672197-28672253,28672678-286728... 29 2.7
12_02_0886 + 24014478-24014565,24014929-24015413 28 6.3
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 28 6.3
08_02_0651 - 19714348-19714395,19715319-19715429,19715503-197155... 28 6.3
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 28 6.3
05_03_0023 + 7457836-7457976,7458313-7458480 28 6.3
07_03_0507 - 18871260-18871361,18871444-18871560,18871792-188721... 28 8.3
03_05_0463 - 24567166-24567178,24568093-24568406 28 8.3
03_04_0162 + 17858802-17861168 28 8.3
>11_06_0728 +
26717018-26717306,26717494-26717598,26717789-26717870,
26717979-26718055,26719087-26719151,26719261-26719302,
26719385-26719444,26719583-26720203,26720315-26720450,
26720667-26720734,26720811-26720948
Length = 560
Score = 47.6 bits (108), Expect = 1e-05
Identities = 32/79 (40%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGP--S 607
F A+IG GPG + IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 246 FNQVMAAIGGNTAGPG--DAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVK 303
Query: 608 LRFDVHMTTSLCQALKTQQ 664
+R SL AL Q
Sbjct: 304 VRRPTDYNPSLAAALGPSQ 322
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Frame = +3
Query: 270 TPLQYKAMQAAGQ----IPANIVADTPQAAVP-VVGSTITRQAXWLYVGNIPFGVTEEET 434
TP Q+ G +P + P P + TR A +YVG +P E+
Sbjct: 183 TPSQFPGTAIPGMFPNMLPMGVGQFNPLVIQPQAMTQQATRHARRVYVGGLPPTANEQSV 242
Query: 435 MEFFNQQM-HLSGLAQAAGNPVL 500
+FNQ M + G G+ VL
Sbjct: 243 AIYFNQVMAAIGGNTAGPGDAVL 265
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/79 (39%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGP--S 607
F A++G GPG + IN DK FAF+E RS++E + AMA DGI F+G
Sbjct: 251 FNQVMAAVGGNTAGPG--DAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVK 308
Query: 608 LRFDVHMTTSLCQALKTQQ 664
+R SL AL Q
Sbjct: 309 VRRPTDYNPSLAAALGPSQ 327
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 300 AGQIPA--NIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQM-HLSG 470
+G +P N+ PQA TR A +YVG +P E +FNQ M + G
Sbjct: 205 SGMLPNMFNLTQTPPQAMT----QQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGG 260
Query: 471 LAQAAGNPVL 500
G+ VL
Sbjct: 261 NTAGPGDAVL 270
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +2
Query: 485 RQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+QPC IN DK AF+EF + ++ T A++FDG +F G SL+
Sbjct: 510 KQPCLSCVINKDKRQAFVEFLTPEDATAALSFDGRSFGGSSLK 552
>06_01_1037 -
8140602-8140782,8141489-8141545,8141649-8141845,
8143174-8143242,8143347-8143490,8144055-8144225
Length = 272
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 330 DTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLA 476
D + ++ G ++T + LY+ N+ +GVT+E+ E F++ HL A
Sbjct: 70 DLFEDSMVAAGLSVTESSTKLYISNLHYGVTKEDIQELFSEMGHLKHCA 118
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 188 DQDRPINVHVDVSLRFTGMYRRRI--RAYHAITIQGDASGGSDSCQYCRRHTTSC 346
D +P + D+ +G +R+ I R HA + D+C C R+ SC
Sbjct: 940 DGSKPCLLQCDLCHGTSGAFRKTIKGRCIHAFCAEESLPKDKDTCAICHRNVGSC 994
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +3
Query: 294 QAAGQIPANIVADTPQAAVPVVGSTITRQAXW---LYVGNIPFGVTEEETMEFFNQ 452
+ A + +N A P P ++ QA L+VGN+P+ V +E+ +FF +
Sbjct: 437 ETAVSVGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQE 492
>03_05_0906 +
28671977-28672111,28672197-28672253,28672678-28672854,
28672935-28673021,28675339-28675403,28676914-28677010,
28677162-28677248
Length = 234
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 247 PPPDSSISRHYNTRRCKRRVRFLPILSPTHHKLP 348
PPP S IS+H + VRF SP H +P
Sbjct: 195 PPPPSLISKHLAKNQRSDDVRFESSWSPAHSDIP 228
>12_02_0886 + 24014478-24014565,24014929-24015413
Length = 190
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 224 SLRFTGMYRRRIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGG 361
++R + RRR R+ ++ D SG SC+YC + T S + GG
Sbjct: 124 TIRTSRSRRRRRRSVVWEHMEVDPSGNEASCRYCTK-TLSANSRGG 168
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 273 PLQYKAMQAAGQIPANIVADTPQAAVPV--VGSTITRQAXWLYVGNIPFGVTEEETMEFF 446
P Q + +AAG+ ++ ++ ++A VG + + L+VGN+P E++ M F
Sbjct: 7 PPQPQPQEAAGREASSSLSPAKESAAGGGGVGGSGAPETNTLWVGNLPAQAAEDDVMASF 66
Query: 447 NQQMHLSGLAQAAG 488
+ L + AG
Sbjct: 67 SPHGALDCVMARAG 80
>08_02_0651 -
19714348-19714395,19715319-19715429,19715503-19715572,
19716081-19716178,19716272-19716319,19716391-19716446,
19718191-19718314,19718417-19718506
Length = 214
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
LY+G+IP G EE+ FF Q
Sbjct: 56 LYIGHIPHGFYEEQMQGFFQQ 76
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 295 CIALYCNGVICSNPAAVHPSKAKAYVYVNVYW 200
C ALY +G + +H S++KA Y++V W
Sbjct: 856 CHALYNHGATRLSVIPIHASRSKALRYLSVRW 887
>05_03_0023 + 7457836-7457976,7458313-7458480
Length = 102
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFF 446
+YVGN+P+ V E+ M++F
Sbjct: 20 VYVGNLPYSVDEQTLMDYF 38
>07_03_0507 -
18871260-18871361,18871444-18871560,18871792-18872120,
18872704-18872871,18873592-18873685,18873707-18873766,
18874702-18874762,18875258-18875319,18875729-18875856,
18876783-18876852,18877472-18877630
Length = 449
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 306 QIPANIVADTPQAAVP--VVGSTITRQAXWLYVGNIP 410
QI N++ DT + P ++G TITR A LY+ P
Sbjct: 299 QIVTNVIRDTRKPLHPQYILGMTITRLAIPLYIFGCP 335
>03_05_0463 - 24567166-24567178,24568093-24568406
Length = 108
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 603 GPLKLIPSKAIACVVSSIDLNSRNAKFLSKLIGKP 499
G L+L + AC SS S NA F L+G P
Sbjct: 66 GELRLYAGLSYACYASSATSPSTNATFAFSLVGTP 100
>03_04_0162 + 17858802-17861168
Length = 788
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 352 GTAACGVSATILAGI*PAACIALY--CNGVICSNPAAV 245
G + G+ A AGI P A +A+Y CNG C + A +
Sbjct: 246 GASDRGLGAGTAAGIAPGAHVAMYKVCNGSGCDDDAVL 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,866,495
Number of Sequences: 37544
Number of extensions: 419005
Number of successful extensions: 1176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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