Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13) 34 0.098
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10) 31 0.69
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 29 4.9
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 29 4.9
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 28 8.5
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 73.3 bits (172), Expect = 2e-13
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 18/136 (13%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQI---------PANIVADT-------PQAAVPVV--GSTITRQ 380
G+E ++ ++YK M+A GQI PA ++ T P +AV + GS +TRQ
Sbjct: 502 GYEQVSAMEYKTMRANGQIAAPAIGTVIPATALSATQSGASVLPASAVASLPHGSQMTRQ 561
Query: 381 AXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMK 560
A LYVGNIPFGVTE +EFFN +M + L A GNPV+A Q+ + + + +
Sbjct: 562 ARRLYVGNIPFGVTENLMIEFFNAKMKEAKLNTAPGNPVIAAQINTEQNFAFIELRSVEE 621
Query: 561 RHRQWLLTVLILKGQA 608
+ +IL+GQA
Sbjct: 622 TTQAMAFDGIILQGQA 637
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +2
Query: 458 ASIGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
A + PG P IN ++NFAF+E RS++ETTQAMAFDGI +G +L+
Sbjct: 590 AKLNTAPGN--PVIAAQINTEQNFAFIELRSVEETTQAMAFDGIILQGQALK 639
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/30 (66%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVPAGVXST 693
LKIRRP DYQP+PG +EN +++VP GV ST
Sbjct: 638 LKIRRPKDYQPIPGMSENASVHVP-GVVST 666
>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
Length = 170
Score = 34.3 bits (75), Expect = 0.098
Identities = 22/83 (26%), Positives = 31/83 (37%)
Frame = +2
Query: 248 RRRIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSAXVICRQHTLWRHRR 427
+R +H + + GD G C HT C A G YN C+ +T H
Sbjct: 88 KRCAPGHHRVNVSGDPFYGKCIPCNCNNHTNDCYADTGLCYN-------CKHNTAGEHCE 140
Query: 428 RNNGVFQSTNASIGPGPGRRQPC 496
+ F A PG ++ PC
Sbjct: 141 LCDDGFYGNAADGTPGDCKQCPC 163
>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
Length = 466
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 254 RIRAYHAITIQGDASGGSDSCQYCRRHTTSC 346
RI+ YH + D S SDSC+ CR T C
Sbjct: 90 RIKRYH---VDVDVSSSSDSCRICRDSTAGC 117
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 315 ANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQ 452
A +A QA R ++VGNIP+ +EE+ E F++
Sbjct: 2 ATALAXIAQAQQKQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSE 47
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 393 YVGNIPFGVTEEETMEFFNQQMHLSG 470
++GN+P+ V E+ +EFF+ L G
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRG 305
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFF 446
+Q L+VGN+PF +T E+ ++ F
Sbjct: 71 KQRYILFVGNLPFDLTTEKVLDHF 94
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 335 TTSCRAGGGFDYNTSSAXVICRQHTLWRHRRRNNGVFQSTNASIGPGPGRRQP-CFGLPI 511
T + R G +N + C Q + HR+R + V+ G G + Q G
Sbjct: 71 TVAARRSGSPIFNFKEHRLFCGQPAKYNHRKRGSDVYPIPKGHDGEGEEKYQKRTLGRRT 130
Query: 512 NFDKNFAFLE 541
+ K+ AFL+
Sbjct: 131 DTIKDAAFLK 140
>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +2
Query: 254 RIRAYHAITIQGDASGGSDSCQYCRRHTTSCRAGGGFDYNTSSA 385
+I+ H ++ + + S S C CR T C++ N S++
Sbjct: 60 KIKVVHTLSARPELSHCSGVCNICRHRTQECKSDDNKSLNGSNS 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,853,643
Number of Sequences: 59808
Number of extensions: 439576
Number of successful extensions: 1235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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