Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF prot... 119 1e-26
BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA au... 119 1e-26
BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA au... 119 1e-26
D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein. 31 5.3
BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation ... 31 5.3
BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation ... 31 5.3
BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation ... 31 5.3
AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein. 31 5.3
AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spli... 31 5.3
AC005057-2|AAS07440.1| 136|Homo sapiens unknown protein. 31 5.3
AC005057-1|AAS07439.1| 156|Homo sapiens unknown protein. 31 5.3
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 30 9.3
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 30 9.3
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 30 9.3
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 30 9.3
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 30 9.3
>X64044-1|CAA45409.1| 475|Homo sapiens splicing factor U2AF
protein.
Length = 475
Score = 119 bits (286), Expect = 1e-26
Identities = 61/94 (64%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
FG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P + IN DKNFAFLEFRS+DETTQAMAFDGI F+G SL+
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 225
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/30 (73%), Positives = 26/30 (86%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVPAGVXST 693
LKIRRPHDYQP+PG +ENP++ VP GV ST
Sbjct: 224 LKIRRPHDYQPLPGMSENPSVYVP-GVVST 252
>BC030574-1|AAH30574.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 119 bits (286), Expect = 1e-26
Identities = 61/94 (64%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
FG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P + IN DKNFAFLEFRS+DETTQAMAFDGI F+G SL+
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 225
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/30 (73%), Positives = 26/30 (86%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVPAGVXST 693
LKIRRPHDYQP+PG +ENP++ VP GV ST
Sbjct: 224 LKIRRPHDYQPLPGMSENPSVYVP-GVVST 252
>BC008740-1|AAH08740.1| 471|Homo sapiens U2 small nuclear RNA
auxiliary factor 2 protein.
Length = 471
Score = 119 bits (286), Expect = 1e-26
Identities = 61/94 (64%), Positives = 67/94 (71%), Gaps = 8/94 (8%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADT--------PQAAVPVVGSTITRQAXWLYVGNIP 410
GFEHITP+QYKAMQAAGQIPA + T VPVVGS +TRQA LYVGNIP
Sbjct: 98 GFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIP 157
Query: 411 FGVTEEETMEFFNQQMHLSGLAQAAGNPVLACQL 512
FG+TEE M+FFN QM L GL QA GNPVLA Q+
Sbjct: 158 FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI 191
Score = 65.7 bits (153), Expect = 2e-10
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = +2
Query: 491 PCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
P + IN DKNFAFLEFRS+DETTQAMAFDGI F+G SL+
Sbjct: 185 PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 225
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/30 (73%), Positives = 26/30 (86%), Gaps = 1/30 (3%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAINVPAGVXST 693
LKIRRPHDYQP+PG +ENP++ VP GV ST
Sbjct: 224 LKIRRPHDYQPLPGMSENPSVYVP-GVVST 252
>D26068-1|BAA05063.1| 230|Homo sapiens KIAA0038 protein.
Length = 230
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 84 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 117
>BC066928-1|AAH66928.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>BC021214-1|AAH21214.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>BC010021-1|AAH10021.1| 228|Homo sapiens eukaryotic translation
initiation factor 4H protein.
Length = 228
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>AF045555-2|AAF75557.1| 228|Homo sapiens wbscr1 protein.
Length = 228
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>AF045555-1|AAC04859.2| 248|Homo sapiens wbscr1 alternative spliced
product protein.
Length = 248
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>AC005057-2|AAS07440.1| 136|Homo sapiens unknown protein.
Length = 136
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>AC005057-1|AAS07439.1| 156|Homo sapiens unknown protein.
Length = 156
Score = 30.7 bits (66), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDV 622
K F ++EF +D +A+ +DG SLR D+
Sbjct: 82 KGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 115
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETME 440
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETME 440
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 29.9 bits (64), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETME 440
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 29.9 bits (64), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETME 440
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 29.9 bits (64), Expect = 9.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETME 440
+P + D + A P V T T + LY+GN+ + T+E+ E
Sbjct: 56 LPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTE 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,518,365
Number of Sequences: 237096
Number of extensions: 2191190
Number of successful extensions: 4918
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4915
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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