Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding pr... 162 4e-40
AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p pro... 162 4e-40
AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA... 162 4e-40
AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA... 89 4e-18
AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p pro... 87 2e-17
AY061516-1|AAL29064.1| 418|Drosophila melanogaster LD46870p pro... 29 6.2
AE014297-14|AAF52166.2| 418|Drosophila melanogaster CG14641-PA ... 29 6.2
AY070578-1|AAL48049.1| 154|Drosophila melanogaster RE12122p pro... 29 8.1
AJ238969-1|CAB53185.1| 154|Drosophila melanogaster cap binding ... 29 8.1
AE014297-2442|AAF55496.1| 154|Drosophila melanogaster CG12357-P... 29 8.1
>L23404-1|AAA03548.1| 416|Drosophila melanogaster RNA binding
protein protein.
Length = 416
Score = 162 bits (394), Expect = 4e-40
Identities = 81/118 (68%), Positives = 92/118 (77%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQA LYVGNIPFGVTEEE
Sbjct: 50 GFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEM 109
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMKRHRQWLLTVLILKGQA 608
MEFFNQQMHL GLAQAAG+PVLACQ+ L K L + + + + LKGQ+
Sbjct: 110 MEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Score = 70.1 bits (164), Expect = 3e-12
Identities = 33/50 (66%), Positives = 35/50 (70%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+G P IN DKNFAFLEFRSIDETTQAMAFDGIN KG SL+
Sbjct: 120 VGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLK 169
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 4/33 (12%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAIN---VPAGVXST 693
LKIRRPHDYQPMPG T+ PAI V +GV ST
Sbjct: 168 LKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST 200
>AY069320-1|AAL39465.1| 416|Drosophila melanogaster LD03714p
protein.
Length = 416
Score = 162 bits (394), Expect = 4e-40
Identities = 81/118 (68%), Positives = 92/118 (77%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQA LYVGNIPFGVTEEE
Sbjct: 50 GFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEM 109
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMKRHRQWLLTVLILKGQA 608
MEFFNQQMHL GLAQAAG+PVLACQ+ L K L + + + + LKGQ+
Sbjct: 110 MEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Score = 70.1 bits (164), Expect = 3e-12
Identities = 33/50 (66%), Positives = 35/50 (70%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+G P IN DKNFAFLEFRSIDETTQAMAFDGIN KG SL+
Sbjct: 120 VGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLK 169
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 4/33 (12%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAIN---VPAGVXST 693
LKIRRPHDYQPMPG T+ PAI V +GV ST
Sbjct: 168 LKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST 200
>AE014298-2376|AAF48596.1| 416|Drosophila melanogaster CG9998-PA
protein.
Length = 416
Score = 162 bits (394), Expect = 4e-40
Identities = 81/118 (68%), Positives = 92/118 (77%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFEHITP+QYKAMQA+GQIPA++V DTPQ AVPVVGSTITRQA LYVGNIPFGVTEEE
Sbjct: 50 GFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEM 109
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMKRHRQWLLTVLILKGQA 608
MEFFNQQMHL GLAQAAG+PVLACQ+ L K L + + + + LKGQ+
Sbjct: 110 MEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Score = 70.1 bits (164), Expect = 3e-12
Identities = 33/50 (66%), Positives = 35/50 (70%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+G P IN DKNFAFLEFRSIDETTQAMAFDGIN KG SL+
Sbjct: 120 VGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLK 169
Score = 44.0 bits (99), Expect = 2e-04
Identities = 23/33 (69%), Positives = 25/33 (75%), Gaps = 4/33 (12%)
Frame = +1
Query: 607 LKIRRPHDYQPMPG-TENPAIN---VPAGVXST 693
LKIRRPHDYQPMPG T+ PAI V +GV ST
Sbjct: 168 LKIRRPHDYQPMPGITDTPAIKPAVVSSGVIST 200
>AE013599-3557|AAF46969.1| 449|Drosophila melanogaster CG3162-PA
protein.
Length = 449
Score = 89.4 bits (212), Expect = 4e-18
Identities = 48/95 (50%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
G+ H+TP QYKAM A+GQI + I++D S ITRQA LYVGNIPFGVT+EE
Sbjct: 68 GYNHLTPQQYKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTDEEM 127
Query: 435 MEFFNQQMHLSGLAQAA-----GNPVLACQLILIK 524
M+FFN Q+ G + GN VL CQ L K
Sbjct: 128 MQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEK 162
Score = 52.4 bits (120), Expect = 6e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 512 NFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N +KNFAFLEFRSIDE +QA+ FDG+ F+G +L+
Sbjct: 159 NLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLK 192
Score = 32.7 bits (71), Expect = 0.50
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 607 LKIRRPHDYQPMP 645
LKIRRPHDYQP+P
Sbjct: 191 LKIRRPHDYQPVP 203
>AY075220-1|AAL68087.1| 449|Drosophila melanogaster AT16577p
protein.
Length = 449
Score = 87.4 bits (207), Expect = 2e-17
Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
G+ H+TP Q+KAM A+GQI + I++D S ITRQA LYVGNIPFGVT+EE
Sbjct: 68 GYNHLTPQQHKAMLASGQIASRILSDGVHGGESAAISMITRQARRLYVGNIPFGVTDEEM 127
Query: 435 MEFFNQQMHLSGLAQAA-----GNPVLACQLILIK 524
M+FFN Q+ G + GN VL CQ L K
Sbjct: 128 MQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEK 162
Score = 52.4 bits (120), Expect = 6e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 512 NFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
N +KNFAFLEFRSIDE +QA+ FDG+ F+G +L+
Sbjct: 159 NLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLK 192
Score = 32.7 bits (71), Expect = 0.50
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 607 LKIRRPHDYQPMP 645
LKIRRPHDYQP+P
Sbjct: 191 LKIRRPHDYQPVP 203
>AY061516-1|AAL29064.1| 418|Drosophila melanogaster LD46870p
protein.
Length = 418
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 342 AAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLA 476
A++P + R LYVGN+P +TE E + F Q + +A
Sbjct: 218 ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIA 262
>AE014297-14|AAF52166.2| 418|Drosophila melanogaster CG14641-PA
protein.
Length = 418
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 342 AAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLA 476
A++P + R LYVGN+P +TE E + F Q + +A
Sbjct: 218 ASLPTLEPPEDRNITTLYVGNLPEEITEPELRDQFYQFGEIRSIA 262
>AY070578-1|AAL48049.1| 154|Drosophila melanogaster RE12122p
protein.
Length = 154
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
R + LYVGN+ F TEE+ E F++
Sbjct: 27 RDSCTLYVGNLSFYTTEEQIHELFSR 52
>AJ238969-1|CAB53185.1| 154|Drosophila melanogaster cap binding
protein 20 protein.
Length = 154
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
R + LYVGN+ F TEE+ E F++
Sbjct: 27 RDSCTLYVGNLSFYTTEEQIHELFSR 52
>AE014297-2442|AAF55496.1| 154|Drosophila melanogaster CG12357-PA
protein.
Length = 154
Score = 28.7 bits (61), Expect = 8.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
R + LYVGN+ F TEE+ E F++
Sbjct: 27 RDSCTLYVGNLSFYTTEEQIHELFSR 52
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,661,012
Number of Sequences: 53049
Number of extensions: 673113
Number of successful extensions: 2302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2299
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -