Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 115 4e-26
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 115 4e-26
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 115 4e-26
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 115 4e-26
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 31 0.80
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 29 2.4
X75331-1|CAA53080.1| 620|Caenorhabditis elegans acetylcholinest... 29 2.4
U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal acetyl... 29 2.4
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 28 5.7
X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2 p... 28 5.7
U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alph... 28 5.7
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 28 5.7
AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeri... 28 5.7
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 28 5.7
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 28 5.7
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 28 5.7
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 115 bits (276), Expect = 4e-26
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+ LYVGNIPFG EE
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 200
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
++FFNQQMHL GLAQA GNP+L CQ+ L K
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQINLDK 230
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ PG P IN DKNFAF+EFRSIDETT MAFDGINF G L+
Sbjct: 213 LAQAPGN--PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 260
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 604 KLKIRRPHDYQPMPGT 651
+LK+RRP DYQP T
Sbjct: 258 QLKVRRPRDYQPSQNT 273
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 115 bits (276), Expect = 4e-26
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+ LYVGNIPFG EE
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 200
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
++FFNQQMHL GLAQA GNP+L CQ+ L K
Sbjct: 201 LDFFNQQMHLCGLAQAPGNPILLCQINLDK 230
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ PG P IN DKNFAF+EFRSIDETT MAFDGINF G L+
Sbjct: 213 LAQAPGN--PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 260
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 604 KLKIRRPHDYQPMPGT 651
+LK+RRP DYQP T
Sbjct: 258 QLKVRRPRDYQPSQNT 273
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 115 bits (276), Expect = 4e-26
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+ LYVGNIPFG EE
Sbjct: 120 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 175
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
++FFNQQMHL GLAQA GNP+L CQ+ L K
Sbjct: 176 LDFFNQQMHLCGLAQAPGNPILLCQINLDK 205
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ PG P IN DKNFAF+EFRSIDETT MAFDGINF G L+
Sbjct: 188 LAQAPGN--PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 235
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 604 KLKIRRPHDYQPMPGT 651
+LK+RRP DYQP T
Sbjct: 233 QLKVRRPRDYQPSQNT 248
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 115 bits (276), Expect = 4e-26
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GFEHITPLQYKAMQAAGQIPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEET 434
GFE TP++YK MQAAGQ+P V Q+AVPVVG ++T Q+ LYVGNIPFG EE
Sbjct: 123 GFETTTPMEYKNMQAAGQVPRGSV----QSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAM 178
Query: 435 MEFFNQQMHLSGLAQAAGNPVLACQLILIK 524
++FFNQQMHL GLAQA GNP+L CQ+ L K
Sbjct: 179 LDFFNQQMHLCGLAQAPGNPILLCQINLDK 208
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/50 (60%), Positives = 33/50 (66%)
Frame = +2
Query: 464 IGPGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ PG P IN DKNFAF+EFRSIDETT MAFDGINF G L+
Sbjct: 191 LAQAPGN--PILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLK 238
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 604 KLKIRRPHDYQPMPGT 651
+LK+RRP DYQP T
Sbjct: 236 QLKVRRPRDYQPSQNT 251
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 327 ADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLA 503
ADT A V + T+ YVGN+P GV E +E FN A+ A P L
Sbjct: 151 ADTDSAKVEEIRRTV-------YVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 504 C 506
C
Sbjct: 204 C 204
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 327 ADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSGLAQAAGNP-VLA 503
ADT A V + T+ YVGN+P GV E +E FN A+ A P L
Sbjct: 151 ADTDSAKVEEIRRTV-------YVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 504 C 506
C
Sbjct: 204 C 204
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQM 458
++VGN+PF +TE+ + FF+ Q+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQI 270
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFN 449
+YVGN PF TEEE FF+
Sbjct: 7 VYVGNAPFQTTEEELGNFFS 26
>X75331-1|CAA53080.1| 620|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 620
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 447 NQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMKRHRQWL 578
++Q+ + G+ +L CQL L +LH L R W+
Sbjct: 373 DRQLWIKGVKDLLPRQILKCQLTLAAVLHEYEPQDLPVTPRDWI 416
>U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal
acetylcholinesterase protein1 protein.
Length = 620
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 447 NQQMHLSGLAQAAGNPVLACQLILIKILHSLNSDQLMKRHRQWL 578
++Q+ + G+ +L CQL L +LH L R W+
Sbjct: 373 DRQLWIKGVKDLLPRQILKCQLTLAAVLHEYEPQDLPVTPRDWI 416
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQMHLSGL 473
+YVGN PF TE++ +F+Q ++S +
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNV 33
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 515 FDKNFAFLEFRSIDETTQAMAFDGINFKGPSLRFDVHMT 631
+ KNFAF+EF+ ++ A+ G F+ + + T
Sbjct: 85 YQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRT 123
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 378 QAXWLYVGNIPFGVTEEETMEFFNQQMHLSGL 473
Q +YVGN+P+ TEEE +F H++ +
Sbjct: 4 QGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNV 35
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 657 VFSAWHRLVVMW-TSNLKLGPLKLIPSKAIACVVSSIDLNSRN 532
V S + R V+ W +N++ P +I ++AI C+ + D+N+R+
Sbjct: 917 VDSKYRRRVLHWLAANVRGKPEDVITTEAIRCLKAGADVNARD 959
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical protein
F02A9.6 protein.
Length = 1295
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 657 VFSAWHRLVVMW-TSNLKLGPLKLIPSKAIACVVSSIDLNSRN 532
V S + R V+ W +N++ P +I ++AI C+ + D+N+R+
Sbjct: 917 VDSKYRRRVLHWLAANVRGKPEDVITTEAIRCLKAGADVNARD 959
>X53156-1|CAA37312.1| 356|Caenorhabditis elegans G-protein a-2
protein.
Length = 356
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 551 IDETTQAMAFDGINFKGPSLRFDVHMTT 634
+D +AM G+NF P DVHM T
Sbjct: 81 MDHLVKAMPAAGLNFSDPMREHDVHMLT 108
>U41996-6|AAA83475.1| 356|Caenorhabditis elegans G protein, alpha
subunit protein 2 protein.
Length = 356
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 551 IDETTQAMAFDGINFKGPSLRFDVHMTT 634
+D +AM G+NF P DVHM T
Sbjct: 81 MDHLVKAMPAAGLNFSDPMREHDVHMLT 108
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.elegans
glp-1 gene,complete cds. ).
Length = 1295
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 657 VFSAWHRLVVMW-TSNLKLGPLKLIPSKAIACVVSSIDLNSRN 532
V S + R V+ W +N++ P +I ++AI C+ + D+N+R+
Sbjct: 917 VDSKYRRRVLHWLAANVRGKPEDVITTEAIRCLKAGADVNARD 959
>AY008125-1|AAG32078.1| 356|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 356
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 551 IDETTQAMAFDGINFKGPSLRFDVHMTT 634
+D +AM G+NF P DVHM T
Sbjct: 81 MDHLVKAMPAAGLNFSDPMREHDVHMLT 108
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 506 PINFDKNFAFLEFRSIDETTQAMA 577
PIN D +AF+ F+++D+ QA A
Sbjct: 203 PINTDAAYAFVMFQTVDQAIQAKA 226
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 506 PINFDKNFAFLEFRSIDETTQAMA 577
PIN D +AF+ F+++D+ QA A
Sbjct: 203 PINTDAAYAFVMFQTVDQAIQAKA 226
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 506 PINFDKNFAFLEFRSIDETTQAMA 577
PIN D +AF+ F+++D+ QA A
Sbjct: 180 PINTDAAYAFVMFQTVDQAIQAKA 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,847
Number of Sequences: 27780
Number of extensions: 328602
Number of successful extensions: 820
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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