Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0718
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 1e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 1e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 41 7e-04
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 35 0.060
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.43
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 4.0
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 28 5.2
At4g17790.1 68417.m02655 expressed protein 28 5.2
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 5.2
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa... 28 5.2
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 28 5.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 6.9
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 28 6.9
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 6.9
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 9.2
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 9.2
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 27 9.2
At3g46300.1 68416.m05011 hypothetical protein 27 9.2
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 27 9.2
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
F A++G GPG + IN +K FAF+E RS++E + AM+ DGI F+G ++
Sbjct: 259 FSQVMAAVGGNTAGPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK 316
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
F A++G GPG + IN +K FAF+E RS++E + AM+ DGI F+G ++
Sbjct: 259 FSQVMAAVGGNTAGPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK 316
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +2
Query: 443 FQSTNASIG---PGPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
F A++G GPG + IN +K FAF+E RS++E + AM+ DGI F+G ++
Sbjct: 259 FSQVMAAVGGNTAGPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK 316
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 473 GPGRRQPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKG 601
GPG + IN +K FAF+E RS++E + AMA DGI +G
Sbjct: 288 GPG--DAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEG 328
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 309 IPANIVADTPQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQQMHLSG 470
+P + P V + TR A +YVG +P E+ FF+Q M G
Sbjct: 230 VPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIG 283
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 488 QPCFGLPINFDKNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+PC IN +K+ A +EF + + + A++ DG +F G +L+
Sbjct: 914 EPCISCIINKEKSQALVEFLTPQDASAALSLDGCSFAGSNLK 955
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 336 PQAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQ 452
P PV + +A LY+G IP G E E FF+Q
Sbjct: 44 PARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQ 82
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 521 KNFAFLEFRSIDETTQAMAFDGINFKGPSLR 613
+ FAF+ F S +E + AM DG + G +R
Sbjct: 75 RGFAFVTFTSTEEASNAMQLDGQDLHGRRIR 105
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFN 449
L+V N+P+ TEEE ME F+
Sbjct: 263 LFVRNLPYTATEEELMEHFS 282
>At4g17790.1 68417.m02655 expressed protein
Length = 264
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 579 KAIACVVSSIDLNSRNAKFLSKLIGKP 499
K +A VVS+ + + FLSKLIG+P
Sbjct: 124 KGMALVVSTATAGASSCYFLSKLIGRP 150
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
+ + ++YVG IPF +TE + + F+Q
Sbjct: 33 KNSAYVYVGGIPFDLTEGDLLAVFSQ 58
>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 306 QIPANIVADTPQAAVP--VVGSTITRQAXWLYVGNIP 410
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
family protein
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 306 QIPANIVADTPQAAVP--VVGSTITRQAXWLYVGNIP 410
QI AN+V D+ + P ++G T+TR A LYV P
Sbjct: 409 QIVANVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCP 445
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
LY+ N+PF +T E+T + F +
Sbjct: 22 LYICNLPFSITSEDTYDLFGR 42
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQQMHLSGLAQA 482
+++GN+PF V +EE + F + +L +A
Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEA 315
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
LYV N+PF +T EE + F +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGK 41
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 145 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 23
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 421 NVFLLSLKTMVYSIRRPPQHFEEYVQNHYFVRSHDIVKACNAY 463
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 145 NVFFLGIETFVGGLYLPPSYLRKYVIQ*LFLEI--VIKALQRY 23
NVF L ++T V + PP + +YV F+ ++KA Y
Sbjct: 1041 NVFLLSLKTMVYSMRKPPQHFEEYVQNHYFVRSHDIVKACNAY 1083
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 375 RQAXWLYVGNIPFGVTEEETMEFFNQ 452
R + +Y+GN+ F TEE+ E F++
Sbjct: 31 RASTTVYIGNVSFYTTEEQLYELFSR 56
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 339 QAAVPVVGSTITRQAXWLYVGNIPFGVTEEETMEFFNQ 452
Q AV GS+I LY+ N+ +GV+ E+ E F++
Sbjct: 94 QTAVVGGGSSIETGTK-LYISNLDYGVSNEDIKELFSE 130
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 390 LYVGNIPFGVTEEETMEFFNQ 452
LYVGN+P+ +T E + F +
Sbjct: 118 LYVGNLPYTITSSELSQIFGE 138
>At3g46300.1 68416.m05011 hypothetical protein
Length = 141
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 257 IRAYHAITIQGDASG-GSDSCQYCRRHTTSCRAGGG 361
+R+Y T + + G G D RRH SC GGG
Sbjct: 64 LRSYTFSTEENEEDGDGGDGEAVTRRHNQSCFRGGG 99
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 527 FAFLEFRSIDETTQAMAFDGINFKG 601
FAFL F S +E A++F+G ++G
Sbjct: 255 FAFLSFTSGEERDAALSFNGTQYEG 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,490
Number of Sequences: 28952
Number of extensions: 303995
Number of successful extensions: 846
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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