Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0717
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    54   1e-08
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   3.4  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    26   4.5  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    25   7.9  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = -3

Query: 566 LFLSNRGFGSLK*RVLAITPLIEFSHLSSSRLPRFDCIRYTYILQFIFVFYRLFKIVVPA 387
           L L N  +GS+   +L     I  S ++   +    C+    +LQ      +L  + + +
Sbjct: 154 LLLKNNYYGSIS--ILVFAAAIVRSEIALLLM----CLILPLLLQRRITLSKLLLVGISS 207

Query: 386 GIGLIAITVIIDSIFWGRLLWPEAEVLWYNTILNKSSNWGVS-FLLMFI 243
            +  +  + +IDS FWG   WPE E   +N +  KSS+WG S F   F+
Sbjct: 208 SLAAVGASFLIDSYFWGAWCWPELEAFLFNVVEGKSSDWGTSPFYYYFV 256


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 372 CHNSDHRFHILGSAAVARSGSFMVQHNLKQKLKLGRILF 256
           CH    RFHI+    +A + +F  Q  ++Q  K   IL+
Sbjct: 182 CHELIARFHIISLHELAHTPNFSRQQEIEQLSKSMEILY 220


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 473 LPRFDCIRYTYILQFIFVFYRLFKIVVPAGIG 378
           L RF C+ +   L F+F FY  F I+  +G G
Sbjct: 284 LARFFCLIFFPFLFFLFWFYMHFNILTISGPG 315


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 434 QFIFVFYRLFKIVVPAGIGLIAITVIIDSIFWGRLLWPEAEVLWYNTI 291
           +F  +F R FK +  A + +  I + +DS+F+ R+ +    ++ YN +
Sbjct: 207 RFRHLFCRWFKAIFVALL-ITGICITVDSLFYHRIQFVAWNIVKYNVL 253


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 327 QQPTPEYGIYDHCYGNQTNSGRYNYF 404
           +Q T  YG YD C     N+  + YF
Sbjct: 121 RQITQVYGFYDECLRKYGNANVWQYF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,745
Number of Sequences: 5004
Number of extensions: 58950
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)