Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0717
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38251| Best HMM Match : fn3 (HMM E-Value=2.1e-05)                   29   4.8  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   28   6.3  
SB_10443| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_38251| Best HMM Match : fn3 (HMM E-Value=2.1e-05)
          Length = 352

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 321 GPQQPTPEYGIYDHCYGNQTNSGRYNY 401
           GP QP  EY  +  CY ++T   +Y Y
Sbjct: 319 GPLQPKIEYQPFIRCYNSETKYSQYYY 345


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 408  IQNSCTCRNWSDCHNSDHRFHILGSAAVARSGSFMV 301
            + ++ +C +  DC  +DH  + L SA VAR   F V
Sbjct: 1321 VLHNASCNDALDCAQTDHPNNELYSACVARDSGFEV 1356


>SB_10443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -2

Query: 459 LYTLYIHTSVYICFLQAIQNSCTCRN 382
           LY+L IHT V    LQAIQ +C+C++
Sbjct: 73  LYSLKIHTGV----LQAIQINCSCKS 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,756,583
Number of Sequences: 59808
Number of extensions: 427684
Number of successful extensions: 920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)