Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0717
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   4.0  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   9.2  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   9.2  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 541  PKPLLERNRNLCKRESFYPHGTSVS 615
            P PL    R L    SF P+G  VS
Sbjct: 1131 PPPLRRDARELASMRSFSPYGADVS 1155


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 325 HSSRPQNMESMITVMAIRPIPAGTT 399
           HSS+     + +T+    P+PA TT
Sbjct: 20  HSSQSPTSTTTVTMATASPVPACTT 44


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 325 HSSRPQNMESMITVMAIRPIPAGTT 399
           HSS+     + +T+    P+PA TT
Sbjct: 20  HSSQSPTSTTTVTMATASPVPACTT 44


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,006
Number of Sequences: 2352
Number of extensions: 14980
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)