Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0717
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    33   0.15 
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    32   0.45 
AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine re...    30   1.8  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    28   7.4  

>U53155-3|AAC48267.3|  492|Caenorhabditis elegans Hypothetical
           protein ZC513.5 protein.
          Length = 492

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = -3

Query: 428 IFVFYRLFKIVVPAGIGLIAITVIIDSIFWGRLLWPEAEVLWYNTILNKSSNWGVSFLLM 249
           +F F     I V      +A+++ IDS FWGR LWPE EV+++N + N+S  +G    L 
Sbjct: 198 VFGFDGAIAIGVRIAAMCLAVSIPIDSYFWGRPLWPEGEVMFFNVVENRSHEYGTQPFLW 257

Query: 248 FIV*LLP 228
           +    LP
Sbjct: 258 YFYSALP 264


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 410 LFKIVVPAGIGLIAITVIIDSIFWGRLLWPEAEVLWYNTILNKSSNWGVSFLLMFIV*LL 231
           +F++V+P  + ++ +T +IDS  +G    P    L +N +   S+ +GV     +IV  +
Sbjct: 203 IFQLVLPVTLPILIVTTLIDSWAYGTPTIPLWNFLQFNVVQGGSALFGVHPWYWYIVSGI 262

Query: 230 PA 225
           PA
Sbjct: 263 PA 264


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -3

Query: 410 LFKIVVPAGIGLIAITVIIDSIFWGRLLWPEAEVLWYNTILNKSSNWGVSFLLMFIV*LL 231
           +F++V+P  + ++ +T +IDS  +G    P    L +N +   S+ +GV     +IV  +
Sbjct: 203 IFQLVLPVTLPILIVTTLIDSWAYGTPTIPLWNFLQFNVVQGGSALFGVHPWYWYIVSGI 262

Query: 230 PA 225
           PA
Sbjct: 263 PA 264


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 440 ILQFIFVFYRLFKIVVPAGIGLIAITVIIDSIFWGRLLW 324
           +  FI  +YR FK ++P    +I +TVI+  I++   LW
Sbjct: 68  VSDFISFYYRRFKRILPVYYLVILVTVILLRIYYEDFLW 106


>AC006680-6|AAK72300.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein13 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
 Frame = -3

Query: 584 SLLQRFLFLSNRGFGSLK*RVLAITPLIEFSHLSSSRLP---RFDCIRYTY---ILQFIF 423
           S ++ F+ +   G GS     LA  P     H+  ++L    R  CI  +Y   ++ FI+
Sbjct: 56  STVELFVPVGMHGTGSAFVIYLAHGPFFGKEHMRLAQLAISIRCGCISLSYGILVIHFIY 115

Query: 422 VFYRLF------KIVVPAGIGLIAITVIIDSIFWG 336
            +  LF      K+  P G+  I I  +I  I WG
Sbjct: 116 RYIALFFPQFVKKVFQPLGMCCILIFFLIHGIVWG 150


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 371 AITVIIDSIFWGRLLWPEAEVLWYNTILNKSSNWGVSFLLMF 246
           A+T I+  I +G  +WP   +L  N I+N+S  W +   L F
Sbjct: 47  ALTDILLMIQFG--IWPGIVILTQNEIINESWRWNIHIYLDF 86


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 527 RVLAITPLIEFSHLSSSRLPRFDCIRYTYILQFI 426
           R L + P+I   HLSS  L    C+  TY+  FI
Sbjct: 193 RYLEVPPIISSDHLSSPHLDELSCL--TYLSYFI 224


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 443 YILQFIFVFYRLFKIVVPAGIGLIAI 366
           YIL+FI++FY LF I    GI L  +
Sbjct: 160 YILKFIWIFYLLFVIKESTGIILYVL 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,460,639
Number of Sequences: 27780
Number of extensions: 325106
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)