Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0717
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40190.1 68415.m04942 glycosyl transferase family 1 protein c...    31   0.97 
At3g02125.1 68416.m00179 hypothetical protein                          29   2.2  
At1g69430.1 68414.m07978 hypothetical protein                          29   2.2  
At5g62340.1 68418.m07825 invertase/pectin methylesterase inhibit...    29   3.0  

>At2g40190.1 68415.m04942 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 463

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 529 HFKLPKPLLERNRNLCKRESFYPHGTSVSETANYLYL-YKRQSSFIYLYYL 678
           H + P  ++  N+     ES YPH T + ++   +YL ++    F  LY+L
Sbjct: 94  HLQSPPKVIHLNKRKWIEESTYPHFTMIGQSLGSVYLAWEALRMFTPLYFL 144


>At3g02125.1 68416.m00179 hypothetical protein
          Length = 355

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 526 RHFKLPKPLLERNRNLCKRESFYPHGTSVSETANYLYLYKRQSSFIYL 669
           RHF LPKP L  +     RES   + +SVS   +  +    Q+  I L
Sbjct: 39  RHFPLPKPSLSASEAQKLRESHQAYNSSVSSYTSSSWSSNHQNHLIDL 86


>At1g69430.1 68414.m07978 hypothetical protein
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 378 SDCHNSDHRFHILGSAAVARSGSFMVQHNLKQKLKLGRILFVNVYCLTSTSKLVQQTI 205
           S   +SDH+FH + +  + R    ++++NL   + +  +L   V  +   + LV Q++
Sbjct: 29  SPSSSSDHKFHSMNALEILRETVRILRYNLGAFMLIALLLICPVSAILLPNLLVDQSV 86


>At5g62340.1 68418.m07825 invertase/pectin methylesterase inhibitor
           family protein similar to SP|Q42534 Pectinesterase 2
           precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2)
           {Arabidopsis thaliana}; contains Pfam profile PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 423 CFLQAIQNSCTCRNWSDCHNSDHRFHILGSAAVARSG 313
           C +QA+Q    C +W+DC      FH+  +   A SG
Sbjct: 117 CSVQALQEVVNCNSWTDC-----LFHVKNAEVCAISG 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,730
Number of Sequences: 28952
Number of extensions: 299319
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)