Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0714
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O78431 Cluster: Uncharacterized 30.1 kDa protein; n=1; ...    35   1.6  
UniRef50_Q6FFL1 Cluster: High affinity Zn transport protein; n=2...    34   2.7  
UniRef50_UPI00015A4B10 Cluster: UPI00015A4B10 related cluster; n...    34   3.6  
UniRef50_Q9N526 Cluster: Serpentine receptor, class t protein 52...    33   4.8  
UniRef50_Q5CPP3 Cluster: ABC transporter family protein, 2x AAA ...    33   4.8  

>UniRef50_O78431 Cluster: Uncharacterized 30.1 kDa protein; n=1;
           Guillardia theta|Rep: Uncharacterized 30.1 kDa protein -
           Guillardia theta (Cryptomonas phi)
          Length = 252

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 507 SLFPKLHIIILKTKIYFPTYAFMPYFNIIFKKKTLTTW 620
           SL+P   I ++K  +    Y F+PYFN    +  LTTW
Sbjct: 212 SLYP---IYVIKNNVLTTNYVFLPYFNSYLLQSNLTTW 246


>UniRef50_Q6FFL1 Cluster: High affinity Zn transport protein; n=2;
           Acinetobacter|Rep: High affinity Zn transport protein -
           Acinetobacter sp. (strain ADP1)
          Length = 271

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 359 KVIEPLFGERIAVNMIA-PIKIVTI*FSLTINFYFWTPQI 475
           +++  LFG+ + +N    PI IV I F+LTI + +W PQI
Sbjct: 112 ELLSYLFGDLLTINWDELPIFIVVIGFALTILYRYWQPQI 151


>UniRef50_UPI00015A4B10 Cluster: UPI00015A4B10 related cluster; n=3;
           Danio rerio|Rep: UPI00015A4B10 UniRef100 entry - Danio
           rerio
          Length = 1282

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 271 LIRINFFKTITYIHCICFITSMPGFIMVIVLRICFFFVRIIFYNFLIRNLF-GLLHFTRI 95
           L++I   KTI Y H  CF  S+  F +V    + F F    F+ F +++ F  +L F  +
Sbjct: 287 LLKITLKKTIKYCHYFCF--SIISFFIVSFF-LFFSFFSFFFFFFFLKSFFSNILSFFLL 343

Query: 94  IFVIS 80
            F+ S
Sbjct: 344 FFLCS 348


>UniRef50_Q9N526 Cluster: Serpentine receptor, class t protein 52;
           n=2; Caenorhabditis|Rep: Serpentine receptor, class t
           protein 52 - Caenorhabditis elegans
          Length = 328

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -1

Query: 673 NPVQTLHNILLKFGRIYAHVVKVFFLNIILKYGIKA*VGKYIFVFSMIICNFGKRLNLNL 494
           NP+Q L+N++   G I  +    FF+      G K   GK +F+ S +IC+      L  
Sbjct: 198 NPIQNLNNVVFISGTIVLYGAYCFFM-AKKTMGYKVSAGKNVFIQSTLICSINCSSALVY 256

Query: 493 TCLKLH 476
           + +  H
Sbjct: 257 SSMMFH 262


>UniRef50_Q5CPP3 Cluster: ABC transporter family protein, 2x AAA
            domain; n=1; Cryptosporidium parvum Iowa II|Rep: ABC
            transporter family protein, 2x AAA domain -
            Cryptosporidium parvum Iowa II
          Length = 1476

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 676  KNPVQTLHNILLKFGRIYAHVVKVFFLNIILKYGIKA*VGKYIFVFSMIICNFG 515
            K+ ++ L  +L      +AH +K F L   L  G+    G  +F+   I C FG
Sbjct: 853  KSALERLSELLFTGNSTHAHTLKRFLLLYSLSTGLSLTFGGLVFILEAIACTFG 906


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,486,871
Number of Sequences: 1657284
Number of extensions: 10316795
Number of successful extensions: 20634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20617
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)