Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0714
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.2  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 573  MPYFNIIFKKKTLTTWAYIRPN 638
            M YF I  KKKT T W  +  N
Sbjct: 1521 MLYFVIEHKKKTSTEWIQVSNN 1542


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 202 GFIMVIVLRICFFFVRIIFYNFLIRNLFGLLHF 104
           G I V +L  CF  +  ++ +    N  G+ HF
Sbjct: 150 GMIFVALLEHCFSMLNYVYSSKCENNSTGVEHF 182


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 TYIHCICFITSMPGFIMVIVL 179
           TY +CI F+ +    + V+VL
Sbjct: 276 TYFNCIMFMVASSVVLTVVVL 296


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 TYIHCICFITSMPGFIMVIVL 179
           TY +CI F+ +    + V+VL
Sbjct: 276 TYFNCIMFMVASSVVLTVVVL 296


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 TYIHCICFITSMPGFIMVIVL 179
           TY +CI F+ +    + V+VL
Sbjct: 276 TYFNCIMFMVASSVVLTVVVL 296


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 TYIHCICFITSMPGFIMVIVL 179
           TY +CI F+ +    + V+VL
Sbjct: 276 TYFNCIMFMVASSVVLTVVVL 296


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 241 TYIHCICFITSMPGFIMVIVL 179
           TY +CI F+ +    + V+VL
Sbjct: 276 TYFNCIMFMVASSVVLTVVVL 296


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 579 YFNIIFKKKTL 611
           +FNI+F+KK L
Sbjct: 87  FFNILFRKKLL 97


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 649 ILLKFGRIYAHVVKVFFLNIILK 581
           +L+KF  +Y   V +   N++LK
Sbjct: 150 LLIKFVEVYPLFVLLIVSNVVLK 172


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 579 YFNIIFKKKTL 611
           +FNI+F+KK L
Sbjct: 83  FFNILFRKKLL 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,451
Number of Sequences: 336
Number of extensions: 3305
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)