Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0714
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   1.9  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   2.5  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 495 KFKLSLFPKLHIIILKTKIYFPTYAFMPYFNIIFKKKTL 611
           KF  S+ P L I+ L   + FPT+ F+P+F    K+  L
Sbjct: 61  KFARSIGPFLLIVFLFFNL-FPTFFFLPFFPDTTKRPNL 98


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 289 NTSHPKLIRINFFKTITYIHCICFITSMPGFIMVI 185
           N  +P +    +F  IT  +C  F   + GFIMVI
Sbjct: 824 NLPNPIITYDQYFPFITAANCASFQDKLDGFIMVI 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,879
Number of Sequences: 5004
Number of extensions: 48287
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)