Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0714
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 154 IIFYNFLIRNLFGLLHFTRIIFVISI 77
           +I Y F I   +G+LH T +I  +++
Sbjct: 241 MIVYEFSISRHYGILHATYVIPAVTM 266


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 461 WTPQIMQFQACQVQIKSFP 517
           WTP  +   +C++ ++ FP
Sbjct: 135 WTPPAIFKSSCEIDVRYFP 153


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 244 ITYIHCICFITSMPGFIMVIVLRICFFFVRI 152
           + +I C       P  + V+ L IC FF+ I
Sbjct: 69  VIWIFCAAKSLRTPSNMFVVNLAICDFFMMI 99


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 277 DVTYFKFKFRTMLITYRTFLF 339
           DVTYF F  +T ++ + ++ F
Sbjct: 154 DVTYFPFDQQTCIMKFGSWTF 174


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 422 VTI*FSLTINF---YFWTPQIMQFQACQVQIKSFP 517
           VT+    T+N+     W P  +   +C++ ++ FP
Sbjct: 123 VTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFP 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,224
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)