Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0714
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    31   0.70 
At5g66020.1 68418.m08313 phosphoinositide phosphatase family pro...    28   6.6  

>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 549 IYFPTYAFMPYFNIIFKKKTLTTWAYIRPNFNKILCRV*T 668
           I+FP+  ++  F+++F       WA I P FN ++  + T
Sbjct: 298 IHFPSIKYLSVFSLLFLAILTLPWASISPIFNNLIAAIKT 337


>At5g66020.1 68418.m08313 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; non-consensus AT donor splice site
           at exon 7, TA donor splice site at exon 10, AT acceptor
           splice at exon 13
          Length = 549

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -1

Query: 520 FGKRLNLNLTCLKLHDLRGPKVKING**KSNRYYFNWRNHVNCNTLTEQWLNYFLICV 347
           F   +NL LT  +LHDL G + K+    +     F W N++    L +  L+ FL+ V
Sbjct: 139 FSYEINLTLTAQRLHDL-GDESKLLPLWRQAEPRFLWNNYM-LEVLIDNKLDQFLLPV 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,358
Number of Sequences: 28952
Number of extensions: 223761
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)