Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0712
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.52 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.8  
UniRef50_Q8ID76 Cluster: Putative uncharacterized protein MAL13P...    33   6.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -2

Query: 675 ILRWVDELTXQLVLSGY*SP 616
           +LRWVDELT  LVLSGY SP
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 485 WYLPARTHKTSYHQ 444
           WYLPARTHK SYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q8ID76 Cluster: Putative uncharacterized protein
           MAL13P1.317; n=1; Plasmodium falciparum 3D7|Rep:
           Putative uncharacterized protein MAL13P1.317 -
           Plasmodium falciparum (isolate 3D7)
          Length = 1173

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +1

Query: 25  CKNFTLTRLKKFHFKKQSKSTYI---CT--IGGLIAKSDLFQTSV*FTEKTVKYKNTAGM 189
           C  F +  +K  +F    K ++I   CT  +  ++ K   F+TSV      +K  +   +
Sbjct: 322 CALFKIREIKYINFFINLKKSFILVKCTTRLYNIMIKKRYFKTSV------LKIGSCRNI 375

Query: 190 LRCTIDNTLLYKIYTYIINKYFTYSYISNTFFFNY 294
            R TI+N L YK   +I+NKY      +  FF +Y
Sbjct: 376 KR-TINNILFYKRNIHILNKYVDIKSDNKQFFASY 409


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,588,545
Number of Sequences: 1657284
Number of extensions: 9656203
Number of successful extensions: 22840
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22828
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)