Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0712
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 548 NGCPAXRTETRYCSRQK*AGRWYLPARTHKTSYH 447
           N C   +T+   C   K    WY P++T    YH
Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 548 NGCPAXRTETRYCSRQK*AGRWYLPARTHKTSYH 447
           N C   +T+   C   K    WY P++T    YH
Sbjct: 325 NWCHPTKTQACLCHPTKTQANWYHPSKTQVNWYH 358


>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 497 ISAVSSNAFRFXGRGSRCNYTEILAFISQSGW 592
           + A++ N   F   G RC+++E  AF  +S W
Sbjct: 34  VGALTFNKVLFVTLGKRCDFSETPAFRKKSSW 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,025
Number of Sequences: 59808
Number of extensions: 313943
Number of successful extensions: 808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)