Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0712
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +1

Query: 187 MLRCTIDNTLLYKIYTYIINKYFTYSYISNTFFFNYEPLLSE 312
           M R +++N+L   I +++++   T +YI N F+  +EP LS+
Sbjct: 205 MNRKSLENSLF--INSFVVSLLLTTNYIYNHFYLMFEPTLSQ 244


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 163 VKYKNTAGMLRCTIDNTLLYKIYTYIIN--KYFTYSYISNTFFFNYEP 300
           VK+KNT  ++R   D T+L  +Y  ++   KY   ++  + +FFN  P
Sbjct: 97  VKHKNTLKLIR---DTTILQLVYRNLVTLLKYKINTFNLSYWFFNNNP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,356
Number of Sequences: 27780
Number of extensions: 239671
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)