Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0712
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = +1

Query: 154 EKTVKYKNTAGMLRCTIDNTLLYKIYTYIINKYFTYSYISNTFFFNYEPL 303
           ++T + ++    +  ++ N   Y  Y    N Y  Y+  +N +  NY+ L
Sbjct: 302 DRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKL 351


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 248 LFIIYVYILYNNVLSMVHRNIPAVFLYFTVF 156
           LF    +I+Y+++ S     I  VFLY+ +F
Sbjct: 337 LFYNTDFIIYSSLSSFYIPCIIMVFLYYNIF 367


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +1

Query: 154 EKTVKYKNTAGMLRCTIDNTLLYKIYTYIINKYFTYSYISNTFFFNYEPL 303
           ++T + ++    +  ++ N  ++    Y  N Y  Y+Y +N  + NY+ L
Sbjct: 69  DRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNY-NNNNYNNYKKL 117


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/46 (19%), Positives = 26/46 (56%)
 Frame = +1

Query: 157 KTVKYKNTAGMLRCTIDNTLLYKIYTYIINKYFTYSYISNTFFFNY 294
           +T +Y + + + R +    +++ ++   IN ++ ++Y+S +   NY
Sbjct: 413 RTPRYNSVSKIDRAS---RIVFPLFFLAINVFYWFAYLSRSERINY 455


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 545 RCNYTEILAFISQSGW 592
           RCN T   ++I   GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,071
Number of Sequences: 438
Number of extensions: 3044
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)