Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0712
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23540.1 68417.m03392 expressed protein probable membrane pro...    29   3.8  
At5g53330.1 68418.m06628 expressed protein                             28   6.6  
At3g58050.1 68416.m06471 expressed protein                             27   8.7  

>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
 Frame = +1

Query: 43  TRLKK-FHFKKQSKSTYICTIGGLIAKSDLFQT-----SV*FTEKTVKYKNTAGMLRCTI 204
           T L++ FH+ K++ +  +  +    + ++L QT     +V  TE +  +K   G L  T+
Sbjct: 173 TELERGFHYSKKASTKNMKALAS--SSTELLQTLVDVFTVSGTEISADFKAAIGCLASTL 230

Query: 205 DNTLLYKIYTYIINKY 252
           D+++  KI   ++NK+
Sbjct: 231 DSSVRKKILISLLNKF 246


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 502 RNRQGGGTYPRGLTRRPTTSKYPN 431
           RN+ GG +YPR +   P+TS  P+
Sbjct: 6   RNKSGGPSYPRPMYGPPSTSPSPS 29


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 569 LRSRYSYNGCPAXRTETRYCSR 504
           ++ R   +GCP+ R E  YC R
Sbjct: 627 VQERQCLDGCPSPRAENHYCDR 648


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,173
Number of Sequences: 28952
Number of extensions: 208059
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)