Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0711
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    30   0.35 
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   5.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.6  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   10.0 
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   10.0 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   10.0 

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 10  LIPYLAWLGYASSL 51
           LIPYLAWLGYA  L
Sbjct: 143 LIPYLAWLGYAGYL 156


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = -1

Query: 628 FSHVYRNQNXQIHFNVISIILVFQAVRMIFALVKIH-DALKNSLEFV--NNQLIINRYSY 458
           +S+   + +  + F      L+F  +  + AL+ +    L + L F+  N    IN    
Sbjct: 108 WSYYVLSNSELLEFEASEYSLLFILIIALDALLTVSLFGLFHHLMFLTTNYSYTINSTLD 167

Query: 457 IEVLFFLH*ISTVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER 314
           I   FF++ +ST+   L+   +++TK      PI+V    +   P  R
Sbjct: 168 ISKGFFINVLSTMVQALVTVTIAFTKFVTIDFPIYVFSSLFLYHPLSR 215


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 437 QKKQYFNIRISINY*LIIDKF*GIFESIMYFYQSKDHP 550
           +K +  N  + +N+  +ID F G  ++ +Y   ++D P
Sbjct: 364 EKDRCLNSNLLVNFDEVIDFFSGFLKACLYLSSNEDKP 401


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
 Frame = -1

Query: 637 CIPFSHVYRNQNXQIHFNVISIILVFQAVRMIFALVKIHDALKNSLEFVNNQLIINRYSY 458
           C+ + +  R ++   HF     I +   V M+     I+D  K + E V N L I  Y  
Sbjct: 27  CLQYFYEVRKRSHYFHFRRFWTIWLKSLVIMVLLFTHIYDCYKTN-ESVWNVLSIITYF- 84

Query: 457 IEVLFFLH*ISTVSLD------LILWIVSYTKCKIQSL--PIHVLYQTYNTEP 323
             +  FLH +   +L       L+ W+  +    +  L  P + ++   N  P
Sbjct: 85  --LALFLHVVEQPTLRIPMASLLMFWLFKFLASALVLLLRPNYTMFPMLNVVP 135


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 524 YFYQSKDHPYCLEH 565
           YF++S D+ YC EH
Sbjct: 201 YFHRSNDNMYCSEH 214


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 676 LFGIQNFDIFEYWCIPFSHVYRNQNXQIHFNVISII 569
           +  + NF I  +W +P    YR+      F  +SI+
Sbjct: 244 ILSVANFIINSFWSVPRESPYRDFYRYDFFQTLSIV 279


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 265  DITLLK*IKICKNMYINALVVQCCKFDI-GHVSVN--FEFYILYMK-LSIKSSQVIQSKF 432
            D+ L K + + ++ +I ALVV+C  F   GH   +  F+ Y L +  L     +V Q K 
Sbjct: 1145 DVVLEKKMALQRDAFIRALVVKCETFSTQGHKDKDNYFQNYQLLLNWLENSDPRVWQIKK 1204

Query: 433  NAKKTVLQY 459
            +  K+  QY
Sbjct: 1205 DYYKSQNQY 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,234
Number of Sequences: 5004
Number of extensions: 56399
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)