Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0711
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454...    28   5.9  
09_04_0292 - 16436918-16439233                                         28   7.8  
04_01_0397 - 5206055-5207106,5207885-5207903                           28   7.8  

>12_02_0869 -
           23844378-23844689,23844924-23845233,23845322-23845447,
           23845522-23845727,23845832-23845964,23846045-23846208,
           23846856-23846948,23847074-23847196,23847318-23847384,
           23847473-23847564,23847667-23847779,23847796-23847845,
           23848098-23848189
          Length = 626

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 393 FHIQNVKFKVYRYMSY--IKLTTLNHQSV 313
           F   N+K+  YR   Y  +KLT LNH S+
Sbjct: 558 FTTSNIKWSYYRDFDYGFVKLTALNHSSL 586


>09_04_0292 - 16436918-16439233
          Length = 771

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 543 IILTAWNTKMIDITLK*IWXF*LR*TWENGIHQYS 647
           ++  +W+   +D  LK +  F +   W+N I+QYS
Sbjct: 423 VLKVSWHRARVDTPLKVLCHFNVSRYWKNAINQYS 457


>04_01_0397 - 5206055-5207106,5207885-5207903
          Length = 356

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 526 IHDALKNSLEFVNNQLIINRYSYIEVL 446
           +HD  +N  EFVN  + I R S++ V+
Sbjct: 96  LHDLTRNGEEFVNEVISIRRTSHVNVV 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,851
Number of Sequences: 37544
Number of extensions: 286840
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)