Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0711
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_27850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.9  

>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
 Frame = -1

Query: 649 FEYWCIPFSHVYRNQNXQIHFNVISIILVFQAVRMIFA--LVKIHDALKN-SLEFVNNQL 479
           + YW +     Y+  + Q  +  +SI   +QAV + +A   V I  A +  S+++   Q 
Sbjct: 330 YAYWTVSIQFAYQTVSIQYAYQTVSIQYAYQAVSIQYAYQTVSIQYAYQTVSIQYA-FQT 388

Query: 478 IINRYSYIEVLFFLH*ISTVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTCF 299
           +  +Y Y + +   +   TVS+    W VS  +   Q++ I   YQT + +   R  +  
Sbjct: 389 VSIQYVY-QTVSIQYAYQTVSIQYAYWTVS-IQYAYQTVSIQYAYQTVSIQYAYRTVSIQ 446

Query: 298 YIFLFILIM*CQKCYSI 248
           Y +  + I    +  SI
Sbjct: 447 YAYQTVSIQFAYQTVSI 463



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
 Frame = -1

Query: 649 FEYWCIPFSHVYRNQNXQIHFNVISIILVFQAVRMIFA--LVKIHDALKN-SLEFVNNQL 479
           F Y  +   + YR  + Q  +  +SI   +Q V + FA   V I  A +  S+++V  Q 
Sbjct: 6   FAYQAVSIQYAYRTVSIQYAYRTVSIQFAYQTVSIQFAYQAVSIQYAYRTVSIQYV-YQT 64

Query: 478 IINRYSYIEVLFFLH*ISTVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTCF 299
           +  +Y+Y + +   +   TVS+  +   VS  +   Q++ I   Y+T + +   R  +  
Sbjct: 65  VSIQYAY-QTVSIQYAYRTVSIQYVYQTVS-IQYVYQTVSIQYAYRTVSIQYAYRTVSIQ 122

Query: 298 YIFLFILIM*CQKCYSI 248
           Y +  + I    +  SI
Sbjct: 123 YAYRTVSIQYVYQTVSI 139



 Score = 31.5 bits (68), Expect = 0.64
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
 Frame = -1

Query: 649 FEYWCIPFSHVYRNQNXQIHFNVISIILVFQAVRMIFA--LVKIHDALKN-SLEFVNNQL 479
           + YW +   +VYR  + Q  +  +SI   ++ V + +A   V I  A +  S+++V  Q 
Sbjct: 177 YAYWTVSIQYVYRTVSIQFAYRTVSIQYAYRTVSIQYAYQTVSIQFAYQAVSIQYV-YQA 235

Query: 478 IINRYSYIEVLFFLH*ISTVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTCF 299
           +  +Y Y + +   +   TVS+      VS  +   +++ I   Y+T + +   R  +  
Sbjct: 236 VSIQYVY-QAVSIQYAYRTVSIQYAYQTVS-IQFAYRTVSIQYTYRTVSIQYAYRTVSIQ 293

Query: 298 YIFLFILIM*CQKCYSI 248
           Y +  + I    +  SI
Sbjct: 294 YAYRTVSIQYAYQTVSI 310



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 30/134 (22%), Positives = 58/134 (43%)
 Frame = -1

Query: 649 FEYWCIPFSHVYRNQNXQIHFNVISIILVFQAVRMIFALVKIHDALKNSLEFVNNQLIIN 470
           + Y  +   + YR  + Q  +  +SI  V+Q V + +A   +      S++F   Q +  
Sbjct: 105 YAYRTVSIQYAYRTVSIQYAYRTVSIQYVYQTVSIQYAYQTV------SIQFA-YQTVSI 157

Query: 469 RYSYIEVLFFLH*ISTVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTCFYIF 290
           +Y+Y  V    +   TVS+    W VS  +   +++ I   Y+T + +   R  +  Y +
Sbjct: 158 QYAYWTV-SIQYAYWTVSIQYAYWTVS-IQYVYRTVSIQFAYRTVSIQYAYRTVSIQYAY 215

Query: 289 LFILIM*CQKCYSI 248
             + I    +  SI
Sbjct: 216 QTVSIQFAYQAVSI 229


>SB_27850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
 Frame = +1

Query: 121 LLYALNIDVRKGINFEQIIIRFH*ISTVHRNVIIINNADNDLLWNSIFDITLLK*IKICK 300
           ++ A+N D+   IN + I I    I+ ++ ++II  N+D  +  NS   I++   I I  
Sbjct: 337 IIIAINSDIIIAINSDIISINSDIITAINNDIIIAINSDIIIAINSDIIISINSDIIIAI 396

Query: 301 N----MYINALVVQCCKFDIGHVSVNFEFYILY--MKLSIKSSQVI 420
           N    + IN+ ++     DI  +++N +   +   + +SIKS  +I
Sbjct: 397 NSDIIISINSDIIIAINSDI-IIAINNDIIAINSDITISIKSDIII 441


>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 373  IQSLPIH-VLYQTYNTEPPER*YTCFYIFLFIL 278
            ++ LPIH V+Y  Y T PP     C++ F +++
Sbjct: 3333 LKKLPIHIVVYYQYPTSPPGILTLCYFSFGYLI 3365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,496
Number of Sequences: 59808
Number of extensions: 369681
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)