Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0711
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical...    29   4.0  
Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    28   5.3  
AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.      28   5.3  
AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.      28   5.3  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    28   5.3  

>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 136 NIDVRKGINFEQIIIRFH*ISTVHRNVIIINNADNDLLWNSI-FDITLLK*IKICKNMYI 312
           N++V + +N   +   F  IS      ++IN  +  +   +  FD  L   + ICK++  
Sbjct: 88  NLNVLERLNLRNVCFNFRKISDEPPTQVVINTINTGMQETTFKFDCGLNHYVMICKDVDN 147

Query: 313 NALVVQCCKFD 345
           + ++   CK+D
Sbjct: 148 DCIITSSCKYD 158


>AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.17 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 658 FDIFEYWCIPFSHVYRNQNXQIHFNVISI 572
           FD +E  C PF H++  Q  +IH    SI
Sbjct: 220 FDNYELECPPFEHLFHFQTFEIHILNFSI 248


>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +1

Query: 112 WNILLYALNIDVRKGINFEQIIIRFH*ISTVHRNVIIINNA 234
           W I  + +++D+++ +NF + I +F+ I+   + V++  NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +1

Query: 112 WNILLYALNIDVRKGINFEQIIIRFH*ISTVHRNVIIINNA 234
           W I  + +++D+++ +NF + I +F+ I+   + V++  NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339


>AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +1

Query: 112 WNILLYALNIDVRKGINFEQIIIRFH*ISTVHRNVIIINNA 234
           W I  + +++D+++ +NF + I +F+ I+   + V++  NA
Sbjct: 296 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 336


>AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +1

Query: 112 WNILLYALNIDVRKGINFEQIIIRFH*ISTVHRNVIIINNA 234
           W I  + +++D+++ +NF + I +F+ I+   + V++  NA
Sbjct: 299 WQIYAHEIDVDIKEVVNFVKEIPKFNFINGNDKAVLLRKNA 339


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 658 FDIFEYWCIPFSHVYRNQNXQIHFNVISI 572
           FD +E  C PF H++  Q  +IH    S+
Sbjct: 228 FDNYELECPPFEHLFHFQTFKIHILKFSV 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,149
Number of Sequences: 27780
Number of extensions: 300167
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)