Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0711
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47780.1 68416.m05205 ABC transporter family protein transpor...    30   1.6  
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    29   3.8  
At1g31300.1 68414.m03830 expressed protein similar to hypothetic...    29   3.8  
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami...    28   6.6  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    27   8.7  
At1g05080.1 68414.m00510 F-box family protein contains F-box dom...    27   8.7  

>At3g47780.1 68416.m05205 ABC transporter family protein transport
           protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 935

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 340 FDIGHVSVNFEFYILYMKLSIKSSQVIQSKFNAKKT 447
           F +   S+ F FY LY+ L I  + ++ S F+  KT
Sbjct: 415 FRLNSYSIQFVFYFLYLNLQIALAFLVSSVFSKVKT 450


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 409 LILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTC 302
           L  WI +  KCKIQ L +  L   Y  E P   Y C
Sbjct: 582 LTSWIDAAVKCKIQHLHVQCLPAKYIYEMPLSLYIC 617


>At1g31300.1 68414.m03830 expressed protein similar to hypothetical
           protein GB:AAF24587 GI:6692122 from [Arabidopsis
           thaliana]
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 311 IYMFLHIFIYFNNVMSKMLF 252
           IYMF H+++++N VM   +F
Sbjct: 222 IYMFYHVYLHYNQVMRMHIF 241


>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, EMBL:EH058
          Length = 888

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 358 SVNFEFYILYMKLSIKSSQVIQSKFNAKKTV 450
           S+ F FY +Y  L I  + ++ S F+  KTV
Sbjct: 377 SIQFVFYFIYSNLQISLAFLVSSIFSKVKTV 407


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 144 IYI*GIKQNIPLSGSLLSLHRFRIVLPDVVRKG 46
           IY+ G+K +    G+L SLH+  +V  D+   G
Sbjct: 685 IYLEGLKVSFAAIGTLSSLHKLEMVNCDITESG 717


>At1g05080.1 68414.m00510 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 427 STVSLDLILWIVSYTKCKIQSLPIHVLYQTYNTEPPER*YTC 302
           +T  +D+  W+     C + +L I +L+    T  P+  Y+C
Sbjct: 98  TTDDVDIGKWVAKAVDCLVMTLTIKLLWSAGPTSLPKSLYSC 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,511
Number of Sequences: 28952
Number of extensions: 260009
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)