Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0710
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    23   2.6  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.5  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 123 DDDEKAELLADTLQTQCTPXTQ 58
           D  E    LAD LQT C+  +Q
Sbjct: 57  DGQELKNNLADALQTSCSKCSQ 78


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 123 DDDEKAELLADTLQTQCTPXTQ 58
           D  E    LAD LQT C+  +Q
Sbjct: 57  DGQELKNNLADALQTSCSKCSQ 78


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 436 KQVVAEDFLHRFKLSDDIRELLR 368
           K +VAE ++  F++ ++ +ELL+
Sbjct: 122 KDLVAEAYVSPFRIDNESQELLK 144


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 244 IRPLHLGLRRCE 279
           +RPL L +RRCE
Sbjct: 227 VRPLSLVVRRCE 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,879
Number of Sequences: 336
Number of extensions: 2075
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)