Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0710
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   3.6  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    26   3.6  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    26   3.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.3  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -2

Query: 391 DDIRELLRAKNASXRAYDRYPTAENRIRMRALQRDVKSRIAEVRDAVV*FLRRTRAL 221
           D+    + A+    RA+DR  TAE   R+ + + D   ++  ++DA      R +A+
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAER--RLESAKEDQARKLQSLQDAQATCALRAQAI 396


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -2

Query: 460 TSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASXRAYDRYPTAENRIRMRALQRDVK 281
           T  + R +    + D  + F  SDD    L    AS RA  R    ENR++     R+  
Sbjct: 313 TKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSLRERY 372

Query: 280 SRIAEVR 260
             I E+R
Sbjct: 373 KHIPEIR 379


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +3

Query: 228 RVLLRNQTTASRTSAMRDFTSRCRAR-IRIRFSAVGYLS*ARIEAFLALRSSLISSDNLK 404
           R+L+ +    S          RC+   + +  SA+ YLS    E  L     LISS N  
Sbjct: 347 RMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQV 406

Query: 405 R*RKSSATTCFDDLSNV-EVMCDVKMSM 485
             ++ SAT    D+  V E+  D K S+
Sbjct: 407 ALKRKSATIEESDIRRVYELFLDQKRSV 434


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 493  AEAIDILTSHITSTLDRSSKQVVAEDFLH 407
            +E +  L +H+ + +  S KQ + EDF+H
Sbjct: 1601 SEWVSKLDTHVRNCIKFSHKQNLEEDFIH 1629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,465
Number of Sequences: 5004
Number of extensions: 34309
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)