Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0710
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0115 + 20944586-20945185                                         29   2.1  
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246...    29   2.1  
02_03_0229 + 16617371-16617970                                         28   4.9  
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844           28   6.5  
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347...    28   6.5  

>09_06_0115 + 20944586-20945185
          Length = 199

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 543 PPXLPFNPDSXRLXRIPLKP*TS*RHTSP 457
           PP LPF PD+ RL R+ L+  +S    SP
Sbjct: 34  PPPLPFLPDNPRLVRLHLRTTSSPPRPSP 62


>05_01_0313 -
           2461487-2461861,2461929-2462513,2462819-2464154,
           2464231-2464338,2464421-2464743
          Length = 908

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 417 TSFTASNCPTILGNSLELRTPRXAPTTGILPRKIVFECVPYN 292
           T + AS C   +G +LE  +P    T  +LPR   FE +P++
Sbjct: 341 TDYLASECA--IGINLERTSPPEETTYVLLPRAAYFEFIPFD 380


>02_03_0229 + 16617371-16617970
          Length = 199

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 543 PPXLPFNPDSXRLXRIPLKP*TS*RHTSP 457
           PP LPF PD+ RL R+ L+  +S    +P
Sbjct: 34  PPPLPFLPDNPRLVRLHLRTPSSPPRPTP 62


>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
          Length = 774

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
 Frame = -2

Query: 481 DILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASXRAYDRYPTAENRIRMR 302
           D+   ++   + R+  +VV  D + R   S  + +++R    S    +R+ +A +   M 
Sbjct: 450 DVAEGNLMELIHRNMLEVVDNDEIGRVN-SCKMHDIVRVLALSIAKEERFGSANDLGTML 508

Query: 301 ALQRDVK--SRIAEVRDAV--V*FLR-RTR-ALSKVLLPLSSYSQIGYGSNY 164
            + ++V+  S      D V  V F+R RT  +LS   LPL   S I  GS+Y
Sbjct: 509 LMDKEVRRLSTCGWSDDTVSTVKFMRLRTLISLSTTSLPLEMLSSILCGSSY 560


>11_01_0448 -
           3469398-3469676,3470015-3470284,3470386-3470476,
           3470581-3470690,3470867-3471136,3471768-3471914
          Length = 388

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 279 LASPKSEMQWSDFLEGLAPXQRSYYRL-ARTLKSDTVVTMP 160
           LA   +E  W   L+GLA  + +YY+  AR  K  TVV++P
Sbjct: 144 LAGSNNE-SWCQGLDGLASREAAYYQQGARFAKWRTVVSIP 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,991
Number of Sequences: 37544
Number of extensions: 254536
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)