Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0710
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)                  31   0.53 
SB_41179| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)
          Length = 251

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 497 YR*SHRHLNVTHHLDIR*VIETSCSGGLPSPLQIVRRY*GT 375
           Y+ +H H+N  +H D+R V   +C   L   L ++ RY  T
Sbjct: 124 YKLNHTHVNCVYHSDVR-VKSDTCEANLIMSLDVILRYTNT 163


>SB_41179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/79 (22%), Positives = 38/79 (48%)
 Frame = -2

Query: 511 PSXQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASXRAYDRY 332
           P   + + A+D++        D+++ + +AE FL    L   +   +R   +    Y  Y
Sbjct: 102 PVINERSSALDLVHDR-GRRFDQTNLRPMAE-FLRTSSLEHTLIRGIRYLTSWSLGYTDY 159

Query: 331 PTAENRIRMRALQRDVKSR 275
           P+AE   + R+++R+ K +
Sbjct: 160 PSAEKHDKARSVEREEKDK 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,816
Number of Sequences: 59808
Number of extensions: 281369
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)