Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0710
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    30   1.3  
At4g22150.1 68417.m03201 UBX domain-containing protein similar t...    28   5.4  
At4g04210.1 68417.m00597 UBX domain-containing protein similar t...    28   5.4  
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    28   5.4  
At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putativ...    28   5.4  
At2g23520.1 68415.m02807 expressed protein ; expression supporte...    27   9.4  

>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 403 FKLSDDI-RELLRAKNASXRAYDRYPTAENRIRMRALQRDVKSRIAEV 263
           F+L ++  R +L+A   +     R+   +N +RMR + ++VKSR+ E+
Sbjct: 229 FELQEEQGRRVLKALELAFIPGMRFLPTKNNLRMRQINKEVKSRLREI 276


>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 302

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 141 GXLAAFDDDEKAELLADTLQTQCTPXTQSVD---PVHVELV 28
           G L   DD E A  L    +++C    + VD   PVHV L+
Sbjct: 130 GPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVNLM 170


>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 303

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 141 GXLAAFDDDEKAELLADTLQTQCTPXTQSVD---PVHVELVDSE 19
           G L   DD E A  L    +++C    +  D   PVHV L+  E
Sbjct: 126 GPLRKLDDPENASFLESIRKSECPKELEPADRRAPVHVNLMRKE 169


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +3

Query: 348 RIEAFLALRSSLISSDNLKR*RKSSATTCFDDLSNVEVMCDVKMSMASAVS*XDGXSPG* 527
           +++A +ALRSSL S D+     +S   T     S   V C+ +    ++V+  D  S   
Sbjct: 27  QVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTE----NSVTRLDLGSANL 82

Query: 528 TGAMVDQISQ 557
           +G +V Q++Q
Sbjct: 83  SGELVPQLAQ 92


>At2g01140.1 68415.m00023 fructose-bisphosphate aldolase, putative
           similar to plastidic aldolase NPALDP1 from Nicotiana
           paniculata [GI:4827251]; contains Pfam profile PF00274
           Fructose-bisphosphate aldolase class-I
          Length = 391

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 264 SEMQWSDFLEGLAPXQRSYYRL-ARTLKSDTVVTMP 160
           +E  W   L+GLA     YY+  AR  K  TVV++P
Sbjct: 151 NEESWCQGLDGLASRSAEYYKQGARFAKWRTVVSVP 186


>At2g23520.1 68415.m02807 expressed protein ; expression supported
           by MPSS
          Length = 862

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 403 FKLSDDIRELLRAKNASXRAYDRYPTAENRIRMRA 299
           F+  DDI ELL A N     Y ++ T+E   ++R+
Sbjct: 104 FESEDDIPELLEAFNKFLTMYPKFETSEKVDQLRS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,030,192
Number of Sequences: 28952
Number of extensions: 188063
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)