Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0708
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    27   2.6  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.5  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   7.9  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 496 SYHQFCPYMITFDLIQHNRRSLSYYNL 416
           S+  + PY + FD++  N +SL  Y+L
Sbjct: 381 SHSSYSPYYVVFDILYLNGKSLVKYSL 407


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 505 MWYHHPVYFCREAVMRFGFKGGAAVVTILETLELISQVG 621
           +++  P  F  E V+     GG AVV +  TLE I Q G
Sbjct: 85  LYFKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
 Frame = +3

Query: 243 KNSGYGSKNTHHNYFV*LG------INFLPYQEVVQTLEKIELHQHKI 368
           KNSGY   +   +  V  G      INF P +++V  +    LHQ+K+
Sbjct: 226 KNSGYRKSSRILDIRVKFGNSSMKAINFQPKKKIVHVVHNPRLHQNKV 273


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 526 YFCREAVMRFGFKGGAAVVTILETLEL 606
           YF   ++M+FGF  G+A +  L T +L
Sbjct: 406 YFVLYSIMQFGFSVGSAPLVSLATKQL 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,462
Number of Sequences: 5004
Number of extensions: 59788
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)