Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0708
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0622 + 19422001-19422330,19422411-19422459,19422552-194227...    28   8.3  

>08_02_0622 +
           19422001-19422330,19422411-19422459,19422552-19422759,
           19422832-19423006,19423101-19423166,19423264-19423377,
           19423473-19423589,19423677-19423803,19423893-19424179,
           19424279-19424469,19424571-19424656,19424749-19424825,
           19425057-19425200
          Length = 656

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 556 GFKGGAAVVTILETLELISQVGGAFAXXXXXXXXXXXXIRWTSVNHGW 699
           GF GGAA+   L+ L+ +    G  +              WTS +HGW
Sbjct: 211 GFMGGAAITIALQQLKYVL---GIKSFTKKTDIISVMRSVWTSAHHGW 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,171
Number of Sequences: 37544
Number of extensions: 388506
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)