Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0708
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_2321| Best HMM Match : DUF1461 (HMM E-Value=2.1)                    28   8.4  

>SB_31800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 288 QNN-CDEYFCFRNLNSSRNGLKNYHCAGRDA 199
           QNN  DEYFCF   +S  +  K  +C  R A
Sbjct: 63  QNNIADEYFCFSQKHSKTDCRKAKNCRKRSA 93


>SB_2321| Best HMM Match : DUF1461 (HMM E-Value=2.1)
          Length = 340

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  LTTKTLYSKRKQYGTQSFAFLKILGIRYMRNGCL-VYRQLVMFSIKYVIAINY*MLLW 192
           +T+   YSK   Y T SF   KI GIR   N  L +Y   ++F+    +   +  LLW
Sbjct: 63  ITSSKNYSKPLTYCTSSFDTNKIEGIRAQYNDALGIYLVFLVFA---SLIFGFAFLLW 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,149,369
Number of Sequences: 59808
Number of extensions: 459884
Number of successful extensions: 915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)