Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0708
         (701 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   5.3  
Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein...    23   9.3  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.3  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    23   9.3  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 160 HI**KTLQAVCILNSHFACTEFLV 89
           H+  KT +AV +L ++F C  F+V
Sbjct: 282 HVITKTSEAVPLLGTYFNCIMFMV 305


>Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 358 STRSNKVKECGGDAKLPAC 414
           ST  N+ KEC G  KL AC
Sbjct: 44  STTWNE-KECNGSTKLAAC 61


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 173 LIAIT--YLIENITSCLYTKQPFRMYR 99
           LIA+T  +L++NI S L     F +YR
Sbjct: 108 LIALTETWLVDNIPSALLFNNNFSVYR 134


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 323 SSANFGKN*TPSAQDLTKSRSAVVTQNFQLVKIIVA*RPSVVLYEVERYHVRAEL 487
           SS  FG    P  Q    SRS V     ++ K+++      V   +  Y VR ++
Sbjct: 342 SSQLFGNGTVPVQQIQLYSRSRVANSQIKVTKMLLIVSTVFVCLNLPSYIVRVKI 396


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,325
Number of Sequences: 2352
Number of extensions: 15852
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)